-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2957

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61742-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61742-T1 636-823-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 41, 299
Couldn't classify 882, 990
Sorry, prediction snap_scaffold_2957-snap.1-T1 fails validation.
(GGC)	 AG	41-299	GT	CAG
(GTT)	 AG	328-464	GT	AGG
(TAA)	 AG	882-990	GT	AGG
-recovered snap_scaffold_2957-snap.1-T1, internal, 41, 299
-recovered snap_scaffold_2957-snap.1-T1, internal, 328, 464
-recovered snap_scaffold_2957-snap.1-T1, internal, 882, 990
Couldn't classify 278, 464
Couldn't classify 882, 991
Sorry, prediction pasa_asmbl_38656.p1 fails validation.
(CTC)	 TC	278-464	GT	AGG
(TAA)	 AG	882-991	TA	GGT
Couldn't classify 251, 464
Sorry, prediction Augustus_model.g41040.t1 fails validation.
(CCC)	 AG	251-464	GT	AGG
(TAA)	 AG	882-994	GC	AGG
-recovered Augustus_model.g41040.t1, terminal, 882, 994
-recovered Augustus_model.g41040.t1, internal, 251, 464
-recovered Augustus_model.g41040.t1, internal, 882, 994

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1093
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support