-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2952

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 838, 1051
Sorry, prediction GlimmerHMM_glimmerT_61741-T1 fails validation.
(ATG)	 CC	88-206	GT	AGG
(GAA)	 AG	838-1051	GT	AGG
-recovered GlimmerHMM_glimmerT_61741-T1, initial, 88, 206
-recovered GlimmerHMM_glimmerT_61741-T1, internal, 838, 1051
Couldn't classify 79, 206
Couldn't classify 838, 1051
Sorry, prediction snap_scaffold_2952-snap.1-T1 fails validation.
(AGT)	 AG	79-206	GT	AGG
(GAA)	 AG	838-1051	GT	AGG
-recovered snap_scaffold_2952-snap.1-T1, internal, 79, 206
-recovered snap_scaffold_2952-snap.1-T1, internal, 838, 1051
Couldn't classify 838, 1000
Sorry, prediction pasa_asmbl_38653.p2 fails validation.
(ATG)	 CC	88-206	GT	AGG
(GAA)	 AG	838-1000	GG	TTG
-recovered pasa_asmbl_38653.p2, initial, 88, 206
Couldn't classify 76, 206
Couldn't classify 838, 1051
Sorry, prediction Augustus_model.g41038.t1 fails validation.
(CAG)	 AG	76-206	GT	AGG
(GAA)	 AG	838-1051	GT	AGG
-recovered Augustus_model.g41038.t1, internal, 76, 206
-recovered Augustus_model.g41038.t1, internal, 838, 1051

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1094
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support