-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_295

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6557, 6677
Sorry, prediction snap_scaffold_295-snap.1-T1 fails validation.
(ATG)	 AG	1116-1174	GT	AGG
(AAC)	 AG	6557-6677	GT	CTG
-recovered snap_scaffold_295-snap.1-T1, initial, 1116, 1174
-recovered snap_scaffold_295-snap.1-T1, internal, 1116, 1174
-recovered snap_scaffold_295-snap.1-T1, internal, 6557, 6677
Valid prediction for GlimmerHMM_glimmerT_60150-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6367, 6400
Sorry, prediction snap_scaffold_295-snap.2-T1 fails validation.
(ATG)	 CA	2901-2907	GT	TGG
(AAG)	 AG	5530-5844	GT	TGG
(GAG)	 AG	5849-5928	GT	ATG
(GTT)	 AG	6367-6400	GT	TGG
-recovered snap_scaffold_295-snap.2-T1, initial, 2901, 2907
-recovered snap_scaffold_295-snap.2-T1, internal, 5530, 5844
-recovered snap_scaffold_295-snap.2-T1, internal, 5849, 5928
-recovered snap_scaffold_295-snap.2-T1, internal, 6367, 6400
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_60149-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6677, rend_intergenic: 2080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8479
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6677, rend_intergenic: 2080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support