-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_294

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8042, 8190
Sorry, prediction GlimmerHMM_glimmerT_60148-T1 fails validation.
(ATG)	 AG	4907-4923	GT	AGG
(ACT)	 AG	7900-7991	GT	CGG
(CGC)	 AG	8042-8190	GT	AGG
-recovered GlimmerHMM_glimmerT_60148-T1, initial, 4907, 4923
-recovered GlimmerHMM_glimmerT_60148-T1, internal, 4907, 4923
-recovered GlimmerHMM_glimmerT_60148-T1, internal, 7900, 7991
-recovered GlimmerHMM_glimmerT_60148-T1, internal, 8042, 8190
Valid prediction for snap_scaffold_294-snap.2-T1
add_exon() Sorry, snap_scaffold_294-snap.2-T1 105-194-initial-1 is invalid.
add_exon() Sorry, snap_scaffold_294-snap.2-T1 3779-3876-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3865, 4780
Sorry, prediction snap_scaffold_294-snap.1-T1 fails validation.
(GAA)	 AG	3865-4780	GT	CTG
(AGC)	 AG	8313-8387	GC	AAG
-recovered snap_scaffold_294-snap.1-T1, terminal, 8313, 8387
-recovered snap_scaffold_294-snap.1-T1, internal, 3865, 4780
-recovered snap_scaffold_294-snap.1-T1, internal, 8313, 8387

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4623, rend_intergenic: 105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8487
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4623, rend_intergenic: 105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support