-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2925

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 85, 181
Sorry, prediction GlimmerHMM_glimmerT_61736-T1 fails validation.
(GCA)	 AG	85-181	GT	CAG
(AAA)	 AG	443-556	GA	GAG
-recovered GlimmerHMM_glimmerT_61736-T1, terminal, 443, 556
-recovered GlimmerHMM_glimmerT_61736-T1, internal, 85, 181
Valid prediction for HiQ_model.g41029.t1
Valid prediction for GlimmerHMM_glimmerT_61735-T1
Couldn't classify 916, 1047
Sorry, prediction pasa_asmbl_38643.p1 fails validation.
(ATG)	 AC	101-181	GT	CAG
(AAA)	 AG	443-552	GT	AGG
(TAA)	 AG	633-684	GT	AGG
(AGT)	 AG	916-1047	GG	GCG
-recovered pasa_asmbl_38643.p1, initial, 101, 181
-recovered pasa_asmbl_38643.p1, internal, 443, 552
-recovered pasa_asmbl_38643.p1, internal, 633, 684
Couldn't classify 85, 181
Sorry, prediction snap_scaffold_2925-snap.1-T1 fails validation.
(GCA)	 AG	85-181	GT	CAG
(AAA)	 AG	443-552	GT	AGG
(TAA)	 AG	633-684	GT	AGG
(GTC)	 AG	801-899	GT	TGG
(AGT)	 AG	916-1071	CA	GAC
-recovered snap_scaffold_2925-snap.1-T1, terminal, 916, 1071
-recovered snap_scaffold_2925-snap.1-T1, internal, 85, 181
-recovered snap_scaffold_2925-snap.1-T1, internal, 443, 552
-recovered snap_scaffold_2925-snap.1-T1, internal, 633, 684
-recovered snap_scaffold_2925-snap.1-T1, internal, 801, 899

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1098
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support