-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2913

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 627, 722
Sorry, prediction Augustus_model.g41025.t1 fails validation.
(ATG)	 TT	116-245	GT	TGG
(ATG)	 AG	340-423	GT	AGG
(CCT)	 AG	627-722	GT	AGG
-recovered Augustus_model.g41025.t1, initial, 116, 245
add_exon() Sorry, Augustus_model.g41025.t1 340-423-initial-1 is invalid.
-recovered Augustus_model.g41025.t1, initial, 340, 423
-recovered Augustus_model.g41025.t1, internal, 340, 423
-recovered Augustus_model.g41025.t1, internal, 627, 722
Couldn't classify 147, 245
Couldn't classify 627, 722
Sorry, prediction snap_scaffold_2913-snap.1-T1 fails validation.
(GTT)	 AG	147-245	GT	TGG
(ATG)	 AG	340-423	GT	AGG
(CCT)	 AG	627-722	GT	AGG
add_exon() Sorry, snap_scaffold_2913-snap.1-T1 340-423-initial-1 is invalid.
-recovered snap_scaffold_2913-snap.1-T1, initial, 340, 423
-recovered snap_scaffold_2913-snap.1-T1, internal, 147, 245
-recovered snap_scaffold_2913-snap.1-T1, internal, 340, 423
-recovered snap_scaffold_2913-snap.1-T1, internal, 627, 722
Couldn't classify 147, 245
Sorry, prediction GlimmerHMM_glimmerT_61732-T1 fails validation.
(GTT)	 AG	147-245	GT	TGG
(ATG)	 AG	340-423	GT	AGG
(CCT)	 AG	627-808	GA	GAG
add_exon() Sorry, GlimmerHMM_glimmerT_61732-T1 340-423-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_61732-T1, initial, 340, 423
-recovered GlimmerHMM_glimmerT_61732-T1, terminal, 627, 808
-recovered GlimmerHMM_glimmerT_61732-T1, internal, 147, 245
-recovered GlimmerHMM_glimmerT_61732-T1, internal, 340, 423

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1101
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support