-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2906

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 46, 120
Couldn't classify 798, 885
Sorry, prediction snap_scaffold_2906-snap.1-T1 fails validation.
(GGC)	 AG	46-120	GT	AGG
(GTG)	 AG	369-538	GT	AGG
(GTG)	 AG	798-885	GT	AGG
-recovered snap_scaffold_2906-snap.1-T1, internal, 46, 120
-recovered snap_scaffold_2906-snap.1-T1, internal, 369, 538
-recovered snap_scaffold_2906-snap.1-T1, internal, 798, 885
Valid prediction for GlimmerHMM_glimmerT_61729-T1
Couldn't classify 798, 885
Sorry, prediction Augustus_model.g41022.t1 fails validation.
(ATG)	 GC	58-120	GT	AGG
(GTG)	 AG	369-538	GT	AGG
(GTG)	 AG	798-885	GT	AGG
-recovered Augustus_model.g41022.t1, initial, 58, 120
-recovered Augustus_model.g41022.t1, internal, 369, 538
-recovered Augustus_model.g41022.t1, internal, 798, 885

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1102
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support