-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_290

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39823.t1
Valid prediction for snap_scaffold_290-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39824.t1
Couldn't classify 758, 1095
Sorry, prediction GlimmerHMM_glimmerT_60142-T1 fails validation.
(GGG)	 AG	758-1095	GT	AGG
(GAG)	 AG	4649-4709	AC	AAA
-recovered GlimmerHMM_glimmerT_60142-T1, terminal, 4649, 4709
-recovered GlimmerHMM_glimmerT_60142-T1, internal, 758, 1095
Couldn't classify 758, 1072
Sorry, prediction snap_scaffold_290-snap.2-T1 fails validation.
(GGG)	 AG	758-1072	GT	CGG
(CAC)	 AG	1404-1466	CA	GAC
-recovered snap_scaffold_290-snap.2-T1, terminal, 1404, 1466
-recovered snap_scaffold_290-snap.2-T1, internal, 758, 1072

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8537
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support