-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2890

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61726-T1
Couldn't classify 1, 474
Sorry, prediction Augustus_model.g41018.t1 fails validation.
(CTC)	 GG	1-474	GT	AGG
(AGC)	 AG	645-912	GT	AGG
(ACC)	 AG	1020-1075	AA	AGA
-recovered Augustus_model.g41018.t1, terminal, 1020, 1075
-recovered Augustus_model.g41018.t1, internal, 645, 912
Couldn't classify 23, 474
Sorry, prediction snap_scaffold_2890-snap.1-T1 fails validation.
(CTA)	 AG	23-474	GT	AGG
(AGC)	 AG	645-912	GT	AGG
(ATC)	 AG	970-1019	AC	AGA
-recovered snap_scaffold_2890-snap.1-T1, terminal, 970, 1019
-recovered snap_scaffold_2890-snap.1-T1, internal, 23, 474
-recovered snap_scaffold_2890-snap.1-T1, internal, 645, 912

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1104
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support