-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_289

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 748, 833
Couldn't classify 7910, 8086
Sorry, prediction snap_scaffold_289-snap.2-T1 fails validation.
(GGA)	 AG	748-833	GT	ACG
(GTG)	 AG	2170-2241	GT	AGG
(GCA)	 AG	4254-4346	GT	AAG
(TAC)	 AG	6866-6967	GT	AGG
(GTT)	 AG	7910-8086	GT	GCG
-recovered snap_scaffold_289-snap.2-T1, internal, 748, 833
-recovered snap_scaffold_289-snap.2-T1, internal, 2170, 2241
-recovered snap_scaffold_289-snap.2-T1, internal, 4254, 4346
-recovered snap_scaffold_289-snap.2-T1, internal, 6866, 6967
-recovered snap_scaffold_289-snap.2-T1, internal, 7910, 8086

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 453, 741
Sorry, prediction GlimmerHMM_glimmerT_60141-T1 fails validation.
(CAT)	 AG	453-741	GT	ACG
(GTG)	 AG	974-1125	GT	GAG
(TTA)	 AG	1545-1686	GT	AGG
(GTG)	 AG	1950-2052	GT	AGG
(GTA)	 AG	3333-3497	GT	GGG
(AAG)	 AG	3759-3883	GT	AGG
(GGC)	 AG	4143-4391	GT	GTG
(GTG)	 AG	4578-4686	GT	AGG
(GTG)	 AG	5001-5114	GT	CAG
(GGA)	 AG	5564-5841	GA	AGG
-recovered GlimmerHMM_glimmerT_60141-T1, terminal, 5564, 5841
-recovered GlimmerHMM_glimmerT_60141-T1, internal, 453, 741
-recovered GlimmerHMM_glimmerT_60141-T1, internal, 974, 1125
-recovered GlimmerHMM_glimmerT_60141-T1, internal, 1545, 1686
-recovered GlimmerHMM_glimmerT_60141-T1, internal, 1950, 2052
-recovered GlimmerHMM_glimmerT_60141-T1, internal, 3333, 3497
-recovered GlimmerHMM_glimmerT_60141-T1, internal, 3759, 3883
-recovered GlimmerHMM_glimmerT_60141-T1, internal, 4143, 4391
-recovered GlimmerHMM_glimmerT_60141-T1, internal, 4578, 4686
-recovered GlimmerHMM_glimmerT_60141-T1, internal, 5001, 5114
Couldn't classify 453, 741
Sorry, prediction snap_scaffold_289-snap.1-T1 fails validation.
(CAT)	 AG	453-741	GT	ACG
(GTG)	 AG	974-1125	GT	GAG
(TTA)	 AG	1545-1731	GT	TTG
(GTG)	 AG	1950-2052	GT	AGG
(GTA)	 AG	3333-3497	GT	GGG
(AAG)	 AG	3759-3883	GT	AGG
(GGC)	 AG	4143-4391	GT	GTG
(GTG)	 AG	4578-4686	GT	AGG
(GTG)	 AG	5001-5114	GT	CAG
(GGA)	 AG	5564-5706	GT	AGG
(ATA)	 AG	5964-6054	GT	AGG
(TGC)	 AG	6231-6391	GT	AGG
(GCG)	 AG	6615-6752	GT	AGG
(GAA)	 AG	8385-8483	TG	GAT
-recovered snap_scaffold_289-snap.1-T1, terminal, 8385, 8483
-recovered snap_scaffold_289-snap.1-T1, internal, 453, 741
-recovered snap_scaffold_289-snap.1-T1, internal, 974, 1125
-recovered snap_scaffold_289-snap.1-T1, internal, 1545, 1731
-recovered snap_scaffold_289-snap.1-T1, internal, 1950, 2052
-recovered snap_scaffold_289-snap.1-T1, internal, 3333, 3497
-recovered snap_scaffold_289-snap.1-T1, internal, 3759, 3883
-recovered snap_scaffold_289-snap.1-T1, internal, 4143, 4391
-recovered snap_scaffold_289-snap.1-T1, internal, 4578, 4686
-recovered snap_scaffold_289-snap.1-T1, internal, 5001, 5114
-recovered snap_scaffold_289-snap.1-T1, internal, 5564, 5706
-recovered snap_scaffold_289-snap.1-T1, internal, 5964, 6054
-recovered snap_scaffold_289-snap.1-T1, internal, 6231, 6391
-recovered snap_scaffold_289-snap.1-T1, internal, 6615, 6752
Valid prediction for Augustus_model.g39822.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8102, rend_intergenic: 748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8554
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8102, rend_intergenic: 748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support