-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_288

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 537, 620
Sorry, prediction snap_scaffold_288-snap.2-T1 fails validation.
(ATC)	 AG	537-620	GT	CCG
(CGC)	 AG	652-760	GT	AGG
(GAC)	 AG	1103-1400	GT	ATG
(GAC)	 AG	1455-1863	TA	AAT
-recovered snap_scaffold_288-snap.2-T1, terminal, 1455, 1863
-recovered snap_scaffold_288-snap.2-T1, internal, 537, 620
-recovered snap_scaffold_288-snap.2-T1, internal, 652, 760
-recovered snap_scaffold_288-snap.2-T1, internal, 1103, 1400
Valid prediction for Augustus_model.g39821.t1
Couldn't classify 5782, 5939
Sorry, prediction snap_scaffold_288-snap.3-T1 fails validation.
(ATG)	 AC	1945-1969	GT	AGG
(AGA)	 AG	4173-4317	GT	GGG
(ACC)	 AG	5527-5626	GT	GGG
(AGG)	 AG	5632-5737	GT	CGG
(GCA)	 AG	5782-5939	GT	AGG
-recovered snap_scaffold_288-snap.3-T1, initial, 1945, 1969
-recovered snap_scaffold_288-snap.3-T1, internal, 4173, 4317
-recovered snap_scaffold_288-snap.3-T1, internal, 5527, 5626
-recovered snap_scaffold_288-snap.3-T1, internal, 5632, 5737
-recovered snap_scaffold_288-snap.3-T1, internal, 5782, 5939
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7820, 8205
Sorry, prediction snap_scaffold_288-snap.1-T1 fails validation.
(ATG)	 AG	4798-4807	GT	CGG
(TCC)	 AG	7107-7411	GT	AGG
(GTG)	 AG	7820-8205	GT	AGG
-recovered snap_scaffold_288-snap.1-T1, initial, 4798, 4807
-recovered snap_scaffold_288-snap.1-T1, internal, 4798, 4807
-recovered snap_scaffold_288-snap.1-T1, internal, 7107, 7411
-recovered snap_scaffold_288-snap.1-T1, internal, 7820, 8205
Couldn't classify 31, 167
Sorry, prediction snap_scaffold_288-snap.4-T1 fails validation.
(GAA)	 AG	31-167	GT	AGG
(TAC)	 AG	633-766	GT	CTG
(ACG)	 AG	2915-3055	GT	AGG
(GAC)	 AG	4400-4523	AC	AGA
-recovered snap_scaffold_288-snap.4-T1, terminal, 4400, 4523
-recovered snap_scaffold_288-snap.4-T1, internal, 31, 167
-recovered snap_scaffold_288-snap.4-T1, internal, 633, 766
-recovered snap_scaffold_288-snap.4-T1, internal, 2915, 3055
Valid prediction for GlimmerHMM_glimmerT_60140-T1
Couldn't classify 7820, 8205
Sorry, prediction Augustus_model.g39820.t1 fails validation.
(ATG)	 GA	6552-6654	GT	ACG
(TCC)	 AG	7107-7411	GT	AGG
(GTG)	 AG	7820-8205	GT	AGG
-recovered Augustus_model.g39820.t1, initial, 6552, 6654
-recovered Augustus_model.g39820.t1, internal, 7107, 7411
-recovered Augustus_model.g39820.t1, internal, 7820, 8205

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3765, rend_intergenic: 537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5939, rend_intergenic: 4040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8562
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3765, rend_intergenic: 537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5939, rend_intergenic: 4040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support