-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2872

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 28, 163
Couldn't classify 784, 1046
Sorry, prediction snap_scaffold_2872-snap.1-T1 fails validation.
(GAC)	 AG	28-163	GT	CGG
(ATT)	 AG	784-1046	GT	GGG
-recovered snap_scaffold_2872-snap.1-T1, internal, 28, 163
-recovered snap_scaffold_2872-snap.1-T1, internal, 784, 1046
Couldn't classify 29, 163
Couldn't classify 784, 1023
Sorry, prediction pasa_asmbl_38626.p2 fails validation.
(ACA)	 GG	29-163	GT	CGG
(ATT)	 AG	784-1023	GG	GGG
Couldn't classify 1, 163
Sorry, prediction HiQ_model.g41014.t1 fails validation.
(TGT)	 GG	1-163	GT	CGG
(ATT)	 AG	784-1050	GA	AAG
-recovered HiQ_model.g41014.t1, terminal, 784, 1050
Valid prediction for GlimmerHMM_glimmerT_61721-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1107
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support