-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_287

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_287-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60138-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60138-T1 1368-1608-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1609, 1773
Sorry, prediction GlimmerHMM_glimmerT_60139-T1 fails validation.
(TGG)	 AG	1609-1773	GT	CGG
(CCA)	 AG	6390-6574	GC	GAG
-recovered GlimmerHMM_glimmerT_60139-T1, terminal, 6390, 6574
-recovered GlimmerHMM_glimmerT_60139-T1, internal, 1609, 1773
-recovered GlimmerHMM_glimmerT_60139-T1, internal, 6390, 6574
Valid prediction for Augustus_model.g39819.t1
Couldn't classify 1609, 1790
Sorry, prediction snap_scaffold_287-snap.1-T1 fails validation.
(TGG)	 AG	1609-1790	GT	GGG
(ACT)	 AG	2450-2566	GT	GGG
(ACT)	 AG	3492-3630	GT	GAG
(CCA)	 AG	6390-6554	GT	AGG
(ACT)	 AG	7467-7621	CT	AGC
-recovered snap_scaffold_287-snap.1-T1, terminal, 7467, 7621
-recovered snap_scaffold_287-snap.1-T1, internal, 1609, 1790
-recovered snap_scaffold_287-snap.1-T1, internal, 2450, 2566
-recovered snap_scaffold_287-snap.1-T1, internal, 3492, 3630
-recovered snap_scaffold_287-snap.1-T1, internal, 6390, 6554

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6955, rend_intergenic: 1695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8563
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6955, rend_intergenic: 1695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support