-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2864

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61719-T1
Couldn't classify 632, 730
Sorry, prediction Augustus_model.g41011.t1 fails validation.
(ATG)	 CC	88-309	GT	AGG
(CTG)	 AG	632-730	GT	AAG
-recovered Augustus_model.g41011.t1, initial, 88, 309
-recovered Augustus_model.g41011.t1, internal, 632, 730
Couldn't classify 64, 309
Couldn't classify 632, 730
Sorry, prediction snap_scaffold_2864-snap.1-T1 fails validation.
(CCC)	 AG	64-309	GT	AGG
(CTG)	 AG	632-730	GT	AAG
-recovered snap_scaffold_2864-snap.1-T1, internal, 64, 309
-recovered snap_scaffold_2864-snap.1-T1, internal, 632, 730

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1109
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support