-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_285

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2485, 2718
Sorry, prediction pasa_asmbl_38622.p2 fails validation.
(ATG)	 TC	1854-1967	GT	AGG
(CGC)	 AG	2485-2718	GT	AGG
-recovered pasa_asmbl_38622.p2, initial, 1854, 1967
-recovered pasa_asmbl_38622.p2, internal, 2485, 2718
Valid prediction for snap_scaffold_285-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_60133-T1
Valid prediction for snap_scaffold_285-snap.4-T1
Valid prediction for Augustus_model.g39817.t1
Valid prediction for snap_scaffold_285-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60135-T1
Valid prediction for GlimmerHMM_glimmerT_60134-T1
Valid prediction for snap_scaffold_285-snap.2-T1
Valid prediction for Augustus_model.g39818.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3682, rend_intergenic: 1854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8570
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 3682, rend_intergenic: 1854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support