-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_283

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_283-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60129-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60128-T1
Couldn't classify 8306, 8415
Sorry, prediction snap_scaffold_283-snap.1-T1 fails validation.
(ATG)	 AC	6890-7056	GT	CCG
(CGT)	 AG	7215-7426	GT	GGG
(AGA)	 AG	7833-8000	GT	AGG
(GGA)	 AG	8193-8287	GT	TAG
(CGC)	 AG	8306-8415	GT	GTG
-recovered snap_scaffold_283-snap.1-T1, initial, 6890, 7056
-recovered snap_scaffold_283-snap.1-T1, internal, 7215, 7426
-recovered snap_scaffold_283-snap.1-T1, internal, 7833, 8000
-recovered snap_scaffold_283-snap.1-T1, internal, 8193, 8287
-recovered snap_scaffold_283-snap.1-T1, internal, 8306, 8415
Valid prediction for snap_scaffold_283-snap.3-T1
Couldn't classify 8193, 8392
Sorry, prediction Augustus_model.g39815.t1 fails validation.
(ATG)	 AC	6890-7056	GT	CCG
(CGT)	 AG	7215-7426	GT	GGG
(AGA)	 AG	7833-8000	GT	AGG
(GGA)	 AG	8193-8392	GT	CCG
-recovered Augustus_model.g39815.t1, initial, 6890, 7056
-recovered Augustus_model.g39815.t1, internal, 7215, 7426
-recovered Augustus_model.g39815.t1, internal, 7833, 8000
-recovered Augustus_model.g39815.t1, internal, 8193, 8392

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1707, rend_intergenic: 311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8596
-exon list size: 18


building trellis

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35.0    
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45.0    
50.0    
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95.0    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 1707, rend_intergenic: 311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support