-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_28/scaffold_28_7498364-7669565

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39191.t1
Valid prediction for GlimmerHMM_glimmerT_59133-T1
Valid prediction for GlimmerHMM_glimmerT_59138-T1
Valid prediction for GlimmerHMM_glimmerT_59132-T1
Valid prediction for pasa_asmbl_37689.p1
Valid prediction for Augustus_model.g39198.t1
Valid prediction for snap_scaffold_28-snap.1715-T1
Valid prediction for snap_scaffold_28-snap.1703-T1
Valid prediction for GlimmerHMM_glimmerT_59124-T1
Valid prediction for pasa_asmbl_37697.p1
Valid prediction for snap_scaffold_28-snap.1726-T1
Valid prediction for Augustus_model.g39197.t1
Valid prediction for GlimmerHMM_glimmerT_59125-T1
Valid prediction for CodingQuarry_transcript_43715-T1
Valid prediction for GlimmerHMM_glimmerT_59127-T1
Valid prediction for snap_scaffold_28-snap.1721-T1
Valid prediction for snap_scaffold_28-snap.1697-T1
Valid prediction for GlimmerHMM_glimmerT_59141-T1
Valid prediction for HiQ_model.g39192.t1
Valid prediction for GlimmerHMM_glimmerT_59134-T1
Valid prediction for GlimmerHMM_glimmerT_59128-T1
Valid prediction for snap_scaffold_28-snap.1693-T1
Valid prediction for snap_scaffold_28-snap.1707-T1
Valid prediction for GlimmerHMM_glimmerT_59131-T1
Valid prediction for snap_scaffold_28-snap.1701-T1
Valid prediction for snap_scaffold_28-snap.1711-T1
Valid prediction for snap_scaffold_28-snap.1720-T1
Valid prediction for HiQ_model.g39194.t1
Valid prediction for GlimmerHMM_glimmerT_59142-T1
Valid prediction for snap_scaffold_28-snap.1728-T1
Valid prediction for Augustus_model.g39200.t1
Valid prediction for GlimmerHMM_glimmerT_59130-T1
Valid prediction for snap_scaffold_28-snap.1689-T1
Valid prediction for snap_scaffold_28-snap.1718-T1
Valid prediction for Augustus_model.g39199.t1
Valid prediction for snap_scaffold_28-snap.1705-T1
Valid prediction for snap_scaffold_28-snap.1699-T1
Valid prediction for CodingQuarry_transcript_43717-T1
Valid prediction for Augustus_model.g39196.t1
Valid prediction for snap_scaffold_28-snap.1712-T1
Valid prediction for snap_scaffold_28-snap.1696-T1
Valid prediction for snap_scaffold_28-snap.1714-T1
Valid prediction for snap_scaffold_28-snap.1686-T1
Valid prediction for snap_scaffold_28-snap.1723-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59139-T1
Valid prediction for snap_scaffold_28-snap.1700-T1
Valid prediction for Augustus_model.g39193.t1
Valid prediction for snap_scaffold_28-snap.1694-T1
Valid prediction for snap_scaffold_28-snap.1691-T1
Valid prediction for pasa_asmbl_38405.p1
Valid prediction for snap_scaffold_28-snap.1713-T1
Valid prediction for GlimmerHMM_glimmerT_59129-T1
Valid prediction for GlimmerHMM_glimmerT_59126-T1
Valid prediction for CodingQuarry_transcript_43718-T1
Valid prediction for snap_scaffold_28-snap.1704-T1
Valid prediction for snap_scaffold_28-snap.1729-T1
Valid prediction for GlimmerHMM_glimmerT_59137-T1
Valid prediction for snap_scaffold_28-snap.1688-T1
Valid prediction for snap_scaffold_28-snap.1687-T1
Valid prediction for snap_scaffold_28-snap.1710-T1
Valid prediction for snap_scaffold_28-snap.1730-T1
Valid prediction for snap_scaffold_28-snap.1717-T1
Valid prediction for GlimmerHMM_glimmerT_59143-T1
Valid prediction for GlimmerHMM_glimmerT_59123-T1
Valid prediction for snap_scaffold_28-snap.1702-T1
Valid prediction for GlimmerHMM_glimmerT_59144-T1
Valid prediction for GlimmerHMM_glimmerT_59136-T1
Valid prediction for snap_scaffold_28-snap.1692-T1
Sorry, intron length (7) is less than minimum required (10)
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_28-snap.1725-T1
Valid prediction for snap_scaffold_28-snap.1724-T1
Valid prediction for Augustus_model.g39190.t1
Valid prediction for snap_scaffold_28-snap.1706-T1
Valid prediction for snap_scaffold_28-snap.1731-T1
Valid prediction for pasa_asmbl_38403.p1
Valid prediction for snap_scaffold_28-snap.1695-T1
Valid prediction for snap_scaffold_28-snap.1722-T1
Valid prediction for snap_scaffold_28-snap.1698-T1
Valid prediction for HiQ_model.g39195.t1
Valid prediction for CodingQuarry_transcript_43714-T1
Valid prediction for GlimmerHMM_glimmerT_59140-T1
Valid prediction for snap_scaffold_28-snap.1727-T1
Valid prediction for CodingQuarry_transcript_43716-T1
Valid prediction for snap_scaffold_28-snap.1719-T1
Valid prediction for snap_scaffold_28-snap.1709-T1
Valid prediction for snap_scaffold_28-snap.1690-T1
Valid prediction for snap_scaffold_28-snap.1716-T1
Valid prediction for GlimmerHMM_glimmerT_59135-T1
Valid prediction for snap_scaffold_28-snap.1685-T1
Valid prediction for snap_scaffold_28-snap.1708-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13348, rend_intergenic: 6871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20149, rend_intergenic: 13542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24373, rend_intergenic: 20424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62600, rend_intergenic: 57245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71716, rend_intergenic: 69065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73219, rend_intergenic: 71802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75103, rend_intergenic: 73514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78315, rend_intergenic: 75296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81587, rend_intergenic: 78699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91140, rend_intergenic: 82972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94986, rend_intergenic: 91211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97931, rend_intergenic: 95075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105453, rend_intergenic: 98299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123029, rend_intergenic: 107744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135402, rend_intergenic: 123033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136402, rend_intergenic: 135498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138093, rend_intergenic: 137024  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142083, rend_intergenic: 141873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143744, rend_intergenic: 142360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146605, rend_intergenic: 143855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148271, rend_intergenic: 146767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160401, rend_intergenic: 149150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170226, rend_intergenic: 161101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 171202
-exon list size: 348


building trellis

0.3    
0.6    
0.9    
1.1    
1.4    
1.7    
2.0    
2.3    
2.6    
2.9    
3.1    
3.4    
3.7    
4.0    
4.3    
4.6    
4.9    
5.1    
5.4    
5.7    
6.0    
6.3    
6.6    
6.9    
7.1    
7.4    
7.7    
8.0    
8.3    
8.6    
8.9    
9.1    
9.4    
9.7    
10.0    
10.3    
10.6    
10.9    
11.1    
11.4    
11.7    
12.0    
12.3    
12.6    
12.9    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
14.9    
15.1    
15.4    
15.7    
16.0    
16.3    
16.6    
16.9    
17.1    
17.4    
17.7    
18.0    
18.3    
18.6    
18.9    
19.1    
19.4    
19.7    
20.0    
20.3    
20.6    
20.9    
21.1    
21.4    
21.7    
22.0    
22.3    
22.6    
22.9    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
26.0    
26.3    
26.6    
26.9    
27.1    
27.4    
27.7    
28.0    
28.3    
28.6    
28.9    
29.1    
29.4    
29.7    
30.0    
30.3    
30.6    
30.9    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.9    
33.1    
33.4    
33.7    
34.0    
34.3    
34.6    
34.9    
35.1    
35.4    
35.7    
36.0    
36.3    
36.6    
36.9    
37.1    
37.4    
37.7    
38.0    
38.3    
38.6    
38.9    
39.1    
39.4    
39.7    
40.0    
40.3    
40.6    
40.9    
41.1    
41.4    
41.7    
42.0    
42.3    
42.6    
42.9    
43.1    
43.4    
43.7    
44.0    
44.3    
44.6    
44.9    
45.1    
45.4    
45.7    
46.0    
46.3    
46.6    
46.9    
47.1    
47.4    
47.7    
48.0    
48.3    
48.6    
48.9    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.1    
51.4    
51.7    
52.0    
52.3    
52.6    
52.9    
53.1    
53.4    
53.7    
54.0    
54.3    
54.6    
54.9    
55.1    
55.4    
55.7    
56.0    
56.3    
56.6    
56.9    
57.1    
57.4    
57.7    
58.0    
58.3    
58.6    
58.9    
59.1    
59.4    
59.7    
60.0    
60.3    
60.6    
60.9    
61.1    
61.4    
61.7    
62.0    
62.3    
62.6    
62.9    
63.1    
63.4    
63.7    
64.0    
64.3    
64.6    
64.9    
65.1    
65.4    
65.7    
66.0    
66.3    
66.6    
66.9    
67.1    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.1    
69.4    
69.7    
70.0    
70.3    
70.6    
70.9    
71.1    
71.4    
71.7    
72.0    
72.3    
72.6    
72.9    
73.1    
73.4    
73.7    
74.0    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.1    
77.4    
77.7    
78.0    
78.3    
78.6    
78.9    
79.1    
79.4    
79.7    
80.0    
80.3    
80.6    
80.9    
81.1    
81.4    
81.7    
82.0    
82.3    
82.6    
82.9    
83.1    
83.4    
83.7    
84.0    
84.3    
84.6    
84.9    
85.1    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.1    
87.4    
87.7    
88.0    
88.3    
88.6    
88.9    
89.1    
89.4    
89.7    
90.0    
90.3    
90.6    
90.9    
91.1    
91.4    
91.7    
92.0    
92.3    
92.6    
92.9    
93.1    
93.4    
93.7    
94.0    
94.3    
94.6    
94.9    
95.1    
95.4    
95.7    
96.0    
96.3    
96.6    
96.9    
97.1    
97.4    
97.7    
98.0    
98.3    
98.6    
98.9    
99.1    
99.4    
99.7    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 13348, rend_intergenic: 6871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20149, rend_intergenic: 13542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24373, rend_intergenic: 20424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62600, rend_intergenic: 57245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71716, rend_intergenic: 69065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73219, rend_intergenic: 71802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75103, rend_intergenic: 73514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78315, rend_intergenic: 75296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81587, rend_intergenic: 78699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91140, rend_intergenic: 82972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94986, rend_intergenic: 91211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97931, rend_intergenic: 95075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105453, rend_intergenic: 98299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123029, rend_intergenic: 107744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135402, rend_intergenic: 123033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136402, rend_intergenic: 135498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138093, rend_intergenic: 137024  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142083, rend_intergenic: 141873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143744, rend_intergenic: 142360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146605, rend_intergenic: 143855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148271, rend_intergenic: 146767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160401, rend_intergenic: 149150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170226, rend_intergenic: 161101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support