-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_28/scaffold_28_7006659-7335102

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_28-snap.1635-T1
Valid prediction for Augustus_model.g39138.t1
Valid prediction for snap_scaffold_28-snap.1628-T1
Valid prediction for GlimmerHMM_glimmerT_59055-T1
Valid prediction for GlimmerHMM_glimmerT_59091-T1
Valid prediction for snap_scaffold_28-snap.1588-T1
Valid prediction for GlimmerHMM_glimmerT_59072-T1
Valid prediction for snap_scaffold_28-snap.1633-T1
Valid prediction for snap_scaffold_28-snap.1620-T1
Valid prediction for GlimmerHMM_glimmerT_59086-T1
Valid prediction for snap_scaffold_28-snap.1626-T1
Valid prediction for GlimmerHMM_glimmerT_59087-T1
Valid prediction for pasa_asmbl_37858.p1
Valid prediction for CodingQuarry_transcript_43701-T1
Valid prediction for HiQ_model.g39156.t1
Valid prediction for snap_scaffold_28-snap.1581-T1
Valid prediction for snap_scaffold_28-snap.1577-T1
Valid prediction for GlimmerHMM_glimmerT_59054-T1
Valid prediction for snap_scaffold_28-snap.1582-T1
Valid prediction for snap_scaffold_28-snap.1632-T1
Valid prediction for Augustus_model.g39158.t1
Valid prediction for snap_scaffold_28-snap.1590-T1
Valid prediction for GlimmerHMM_glimmerT_59078-T1
Valid prediction for CodingQuarry_transcript_43705-T1
Valid prediction for HiQ_model.g39153.t1
Valid prediction for pasa_asmbl_37635.p2
Valid prediction for snap_scaffold_28-snap.1607-T1
Valid prediction for Augustus_model.g39145.t1
Valid prediction for snap_scaffold_28-snap.1606-T1
Valid prediction for snap_scaffold_28-snap.1595-T1
Valid prediction for GlimmerHMM_glimmerT_59048-T1
Valid prediction for snap_scaffold_28-snap.1642-T1
Valid prediction for snap_scaffold_28-snap.1640-T1
Valid prediction for CodingQuarry_transcript_43703-T1
Valid prediction for CodingQuarry_transcript_43700-T1
Valid prediction for Augustus_model.g39157.t1
Valid prediction for GlimmerHMM_glimmerT_59060-T1
Valid prediction for snap_scaffold_28-snap.1608-T1
Valid prediction for pasa_asmbl_37652.p1
Valid prediction for HiQ_model.g39152.t1
Valid prediction for snap_scaffold_28-snap.1605-T1
Valid prediction for GlimmerHMM_glimmerT_59098-T1
Couldn't classify 234288, 234385
Sorry, prediction pasa_asmbl_37650.p1 fails validation.
(ATA)	 AC	234288-234385	GT	CGG
(TTC)	 AG	234524-234618	GT	AGG
(CCA)	 AG	234782-235038	GT	TGG
(TCT)	 AG	235151-235588	CC	AAC
-recovered pasa_asmbl_37650.p1, terminal, 235151, 235588
-recovered pasa_asmbl_37650.p1, internal, 234524, 234618
-recovered pasa_asmbl_37650.p1, internal, 234782, 235038
Valid prediction for CodingQuarry_transcript_43699-T1
Valid prediction for snap_scaffold_28-snap.1614-T1
Valid prediction for GlimmerHMM_glimmerT_59097-T1
Valid prediction for HiQ_model.g39159.t1
Valid prediction for GlimmerHMM_glimmerT_59069-T1
Valid prediction for CodingQuarry_transcript_43702-T1
Valid prediction for GlimmerHMM_glimmerT_59070-T1
Valid prediction for GlimmerHMM_glimmerT_59052-T1
Valid prediction for Augustus_model.g39134.t1
Valid prediction for HiQ_model.g39147.t1
Valid prediction for snap_scaffold_28-snap.1594-T1
Valid prediction for pasa_asmbl_37644.p1
Valid prediction for GlimmerHMM_glimmerT_59064-T1
Valid prediction for GlimmerHMM_glimmerT_59083-T1
Valid prediction for Augustus_model.g39167.t1
Valid prediction for GlimmerHMM_glimmerT_59082-T1
Valid prediction for CodingQuarry_transcript_43704-T1
Valid prediction for pasa_asmbl_37646.p1
Couldn't classify 250361, 250453
Sorry, prediction pasa_asmbl_37656.p1 fails validation.
(ATG)	 TA	245527-245843	GT	AGG
(TGG)	 AG	247017-247123	GT	ATG
(ACG)	 AG	247277-247362	GT	AGG
(GCG)	 AG	247748-247837	GT	GGG
(TTA)	 AG	248015-248056	GT	AGG
(GGT)	 AG	248587-248827	GT	CGG
(CTC)	 AG	249085-249174	GT	GGG
(ACT)	 AG	249584-249678	GT	AGG
(GCT)	 AG	249862-250149	GC	AGG
(GCC)	 AG	250361-250453	TG	GCT
-recovered pasa_asmbl_37656.p1, initial, 245527, 245843
-recovered pasa_asmbl_37656.p1, internal, 247017, 247123
-recovered pasa_asmbl_37656.p1, internal, 247277, 247362
-recovered pasa_asmbl_37656.p1, internal, 247748, 247837
-recovered pasa_asmbl_37656.p1, internal, 248015, 248056
-recovered pasa_asmbl_37656.p1, internal, 248587, 248827
-recovered pasa_asmbl_37656.p1, internal, 249085, 249174
-recovered pasa_asmbl_37656.p1, internal, 249584, 249678
-recovered pasa_asmbl_37656.p1, internal, 249862, 250149
Valid prediction for snap_scaffold_28-snap.1622-T1
Valid prediction for snap_scaffold_28-snap.1629-T1
Valid prediction for GlimmerHMM_glimmerT_59084-T1
Valid prediction for snap_scaffold_28-snap.1601-T1
Valid prediction for snap_scaffold_28-snap.1623-T1
Valid prediction for snap_scaffold_28-snap.1598-T1
Valid prediction for snap_scaffold_28-snap.1611-T1
Valid prediction for snap_scaffold_28-snap.1631-T1
Valid prediction for snap_scaffold_28-snap.1638-T1
Valid prediction for snap_scaffold_28-snap.1644-T1
Valid prediction for GlimmerHMM_glimmerT_59050-T1
Valid prediction for snap_scaffold_28-snap.1576-T1
Valid prediction for GlimmerHMM_glimmerT_59094-T1
Valid prediction for Augustus_model.g39160.t1
Valid prediction for GlimmerHMM_glimmerT_59096-T1
Valid prediction for GlimmerHMM_glimmerT_59068-T1
Valid prediction for HiQ_model.g39165.t1
Valid prediction for snap_scaffold_28-snap.1618-T1
Valid prediction for pasa_asmbl_37660.p1
Valid prediction for snap_scaffold_28-snap.1602-T1
Valid prediction for pasa_asmbl_37640.p1
Valid prediction for Augustus_model.g39155.t1
Valid prediction for GlimmerHMM_glimmerT_59049-T1
Valid prediction for snap_scaffold_28-snap.1580-T1
Valid prediction for GlimmerHMM_glimmerT_59085-T1
Valid prediction for GlimmerHMM_glimmerT_59080-T1
Valid prediction for snap_scaffold_28-snap.1591-T1
Valid prediction for snap_scaffold_28-snap.1630-T1
Valid prediction for snap_scaffold_28-snap.1625-T1
Valid prediction for snap_scaffold_28-snap.1584-T1
Couldn't classify 244070, 244289
Sorry, prediction pasa_asmbl_37654.p1 fails validation.
(CAG)	 TG	244070-244289	GT	GGG
(GAG)	 AG	244407-244508	GT	CGG
(ATT)	 AG	244638-244783	AA	AGA
-recovered pasa_asmbl_37654.p1, terminal, 244638, 244783
-recovered pasa_asmbl_37654.p1, internal, 244407, 244508
Valid prediction for GlimmerHMM_glimmerT_59081-T1
Valid prediction for Augustus_model.g39151.t1
Valid prediction for snap_scaffold_28-snap.1578-T1
Valid prediction for snap_scaffold_28-snap.1616-T1
Valid prediction for snap_scaffold_28-snap.1609-T1
Valid prediction for GlimmerHMM_glimmerT_59059-T1
Valid prediction for snap_scaffold_28-snap.1579-T1
Valid prediction for snap_scaffold_28-snap.1613-T1
Valid prediction for HiQ_model.g39154.t1
Valid prediction for snap_scaffold_28-snap.1603-T1
Valid prediction for GlimmerHMM_glimmerT_59077-T1
Valid prediction for snap_scaffold_28-snap.1586-T1
Valid prediction for snap_scaffold_28-snap.1612-T1
Valid prediction for GlimmerHMM_glimmerT_59062-T1
Valid prediction for GlimmerHMM_glimmerT_59089-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 47546, 47606
Sorry, prediction pasa_asmbl_38602.p1 fails validation.
(ATG)	 TC	44191-44284	GT	TGG
(CCG)	 AG	44703-45259	GT	TGG
(GTT)	 AG	46082-46206	GT	AGG
(ATA)	 AG	46356-46572	GT	TGG
(CTG)	 AG	46962-47159	GT	AGG
(ATG)	 AG	47337-47428	GT	AGG
(GAA)	 AG	47546-47606	GT	AGG
-recovered pasa_asmbl_38602.p1, initial, 44191, 44284
-recovered pasa_asmbl_38602.p1, initial, 47337, 47428
-recovered pasa_asmbl_38602.p1, internal, 44703, 45259
-recovered pasa_asmbl_38602.p1, internal, 46082, 46206
-recovered pasa_asmbl_38602.p1, internal, 46356, 46572
-recovered pasa_asmbl_38602.p1, internal, 46962, 47159
-recovered pasa_asmbl_38602.p1, internal, 47337, 47428
-recovered pasa_asmbl_38602.p1, internal, 47546, 47606
Valid prediction for snap_scaffold_28-snap.1647-T1
Valid prediction for Augustus_model.g39141.t1
Valid prediction for GlimmerHMM_glimmerT_59058-T1
Valid prediction for HiQ_model.g39164.t1
Valid prediction for GlimmerHMM_glimmerT_59065-T1
Couldn't classify 152598, 152679
Couldn't classify 153420, 153468
Sorry, prediction pasa_asmbl_38606.p2 fails validation.
(GCA)	 AC	152598-152679	GT	AGG
(GTT)	 AG	153026-153215	GT	AGG
(TAG)	 AG	153420-153468	AA	AGA
-recovered pasa_asmbl_38606.p2, internal, 153026, 153215
Valid prediction for HiQ_model.g39166.t1
Valid prediction for Augustus_model.g39144.t1
Valid prediction for snap_scaffold_28-snap.1604-T1
Couldn't classify 37455, 37537
Sorry, prediction pasa_asmbl_38590.p1 fails validation.
(ATG)	 GA	36081-36229	GT	AGG
(CGA)	 AG	36335-36477	GT	CGG
(TCT)	 AG	36612-36718	GT	ACG
(GAC)	 AG	36863-36949	GT	CGG
(ACG)	 AG	37183-37294	GT	AGG
(ATT)	 AG	37455-37537	TC	GCT
-recovered pasa_asmbl_38590.p1, initial, 36081, 36229
-recovered pasa_asmbl_38590.p1, internal, 36335, 36477
-recovered pasa_asmbl_38590.p1, internal, 36612, 36718
-recovered pasa_asmbl_38590.p1, internal, 36863, 36949
-recovered pasa_asmbl_38590.p1, internal, 37183, 37294
Valid prediction for GlimmerHMM_glimmerT_59073-T1
Valid prediction for Augustus_model.g39146.t1
Valid prediction for snap_scaffold_28-snap.1587-T1
Valid prediction for GlimmerHMM_glimmerT_59061-T1
Valid prediction for GlimmerHMM_glimmerT_59095-T1
Valid prediction for snap_scaffold_28-snap.1599-T1
Couldn't classify 157416, 157451
Couldn't classify 161784, 161931
Sorry, prediction pasa_asmbl_38378.p1 fails validation.
(GGG)	 CG	157416-157451	GT	AGG
(AAC)	 AG	157546-157783	GT	ACG
(AGT)	 AG	158556-158692	GT	GGG
(GAG)	 AG	158804-158930	GT	AGG
(GCA)	 AG	159023-159160	GT	AGG
(GTT)	 AG	159461-159597	GT	CTG
(GTG)	 AG	160164-160324	GT	AGG
(AGA)	 AG	160605-160786	GT	CAG
(ATG)	 AG	160902-161107	GT	AGG
(AAC)	 AG	161390-161520	GT	GAG
(CTC)	 AG	161784-161931	AC	CCA
add_exon() Sorry, pasa_asmbl_38378.p1 160902-161107-initial-1 is invalid.
-recovered pasa_asmbl_38378.p1, initial, 160902, 161107
add_exon() Sorry, pasa_asmbl_38378.p1 158804-158930-terminal-3 is invalid.
-recovered pasa_asmbl_38378.p1, terminal, 158804, 158930
-recovered pasa_asmbl_38378.p1, internal, 157546, 157783
-recovered pasa_asmbl_38378.p1, internal, 158556, 158692
-recovered pasa_asmbl_38378.p1, internal, 158804, 158930
-recovered pasa_asmbl_38378.p1, internal, 159023, 159160
-recovered pasa_asmbl_38378.p1, internal, 159461, 159597
-recovered pasa_asmbl_38378.p1, internal, 160164, 160324
-recovered pasa_asmbl_38378.p1, internal, 160605, 160786
-recovered pasa_asmbl_38378.p1, internal, 160902, 161107
-recovered pasa_asmbl_38378.p1, internal, 161390, 161520
Valid prediction for Augustus_model.g39137.t1
Valid prediction for Augustus_model.g39149.t1
Valid prediction for Augustus_model.g39140.t1
Valid prediction for GlimmerHMM_glimmerT_59047-T1
Valid prediction for GlimmerHMM_glimmerT_59090-T1
Valid prediction for GlimmerHMM_glimmerT_59076-T1
Valid prediction for GlimmerHMM_glimmerT_59051-T1
Couldn't classify 144571, 144605
Sorry, prediction pasa_asmbl_38380.p1 fails validation.
(AAC)	 AA	144571-144605	GT	AGG
(ACT)	 AG	144812-144932	GT	CTG
(GTG)	 AG	145271-145399	GT	AGG
(GAG)	 AG	146024-146148	GT	AGG
(GCT)	 AG	146457-146610	GT	AGG
(ACT)	 AG	146778-146881	GT	AGG
(TTT)	 AG	147066-147270	GT	AGG
(TTG)	 AG	147393-147512	GT	AGG
(GTG)	 AG	147738-147842	GT	AGG
(GAG)	 AG	148011-148178	CG	GAC
-recovered pasa_asmbl_38380.p1, terminal, 148011, 148178
-recovered pasa_asmbl_38380.p1, internal, 144812, 144932
-recovered pasa_asmbl_38380.p1, internal, 145271, 145399
-recovered pasa_asmbl_38380.p1, internal, 146024, 146148
-recovered pasa_asmbl_38380.p1, internal, 146457, 146610
-recovered pasa_asmbl_38380.p1, internal, 146778, 146881
-recovered pasa_asmbl_38380.p1, internal, 147066, 147270
-recovered pasa_asmbl_38380.p1, internal, 147393, 147512
-recovered pasa_asmbl_38380.p1, internal, 147738, 147842
Couldn't classify 139958, 139977
Couldn't classify 141412, 141549
Sorry, prediction pasa_asmbl_38568.p2 fails validation.
(GGT)	 CT	139958-139977	GT	AGG
(GGG)	 AG	140751-140889	GT	AGG
(GTG)	 AG	141412-141549	CA	GCC
-recovered pasa_asmbl_38568.p2, internal, 140751, 140889
Couldn't classify 163902, 164150
Sorry, prediction pasa_asmbl_38375.p1 fails validation.
(GCC)	 CC	163902-164150	GT	AGG
(GTT)	 AG	164290-164497	GT	AGG
(GCG)	 AG	164930-165153	GT	AGG
(ATT)	 AG	165415-165560	GT	AGG
(AAC)	 AG	166659-166762	GT	AGG
(TTC)	 AG	166955-167078	GT	AGG
(GTG)	 AG	167838-168028	GT	CAG
(ACG)	 AG	168148-168294	GT	AGG
(GCC)	 AG	168496-168615	GT	AGG
(GAG)	 AG	168910-169065	GT	CAG
(GCG)	 AG	169174-169277	GT	AGG
(GGG)	 AG	169391-169612	GT	ATG
(GTG)	 AG	169885-170051	GT	AGG
(CTG)	 AG	170346-170541	GT	AGG
(GCT)	 AG	172548-172770	GT	AGG
(GCT)	 AG	173527-173663	GG	AGG
-recovered pasa_asmbl_38375.p1, terminal, 173527, 173663
-recovered pasa_asmbl_38375.p1, internal, 164290, 164497
-recovered pasa_asmbl_38375.p1, internal, 164930, 165153
-recovered pasa_asmbl_38375.p1, internal, 165415, 165560
-recovered pasa_asmbl_38375.p1, internal, 166659, 166762
-recovered pasa_asmbl_38375.p1, internal, 166955, 167078
-recovered pasa_asmbl_38375.p1, internal, 167838, 168028
-recovered pasa_asmbl_38375.p1, internal, 168148, 168294
-recovered pasa_asmbl_38375.p1, internal, 168496, 168615
-recovered pasa_asmbl_38375.p1, internal, 168910, 169065
-recovered pasa_asmbl_38375.p1, internal, 169174, 169277
-recovered pasa_asmbl_38375.p1, internal, 169391, 169612
-recovered pasa_asmbl_38375.p1, internal, 169885, 170051
-recovered pasa_asmbl_38375.p1, internal, 170346, 170541
-recovered pasa_asmbl_38375.p1, internal, 172548, 172770
Valid prediction for HiQ_model.g39163.t1
Valid prediction for snap_scaffold_28-snap.1600-T1
Valid prediction for Augustus_model.g39143.t1
Valid prediction for HiQ_model.g39161.t1
Valid prediction for GlimmerHMM_glimmerT_59088-T1
Valid prediction for snap_scaffold_28-snap.1643-T1
Valid prediction for snap_scaffold_28-snap.1634-T1
Couldn't classify 162772, 163322
Sorry, prediction pasa_asmbl_38377.p1 fails validation.
(ATG)	 GC	161447-161520	GT	GAG
(CTC)	 AG	161784-161989	GT	AGG
(GTG)	 AG	162202-162381	GT	AGG
(GAG)	 AG	162772-163322	TC	GCT
-recovered pasa_asmbl_38377.p1, initial, 161447, 161520
add_exon() Sorry, pasa_asmbl_38377.p1 161784-161989-terminal-2 is invalid.
-recovered pasa_asmbl_38377.p1, terminal, 161784, 161989
add_exon() Sorry, pasa_asmbl_38377.p1 162202-162381-terminal-1 is invalid.
-recovered pasa_asmbl_38377.p1, terminal, 162202, 162381
-recovered pasa_asmbl_38377.p1, internal, 161784, 161989
-recovered pasa_asmbl_38377.p1, internal, 162202, 162381
Couldn't classify 163455, 163847
Sorry, prediction pasa_asmbl_38376.p1 fails validation.
(CAG)	 CC	163455-163847	CA	GCC
Valid prediction for snap_scaffold_28-snap.1592-T1
Valid prediction for GlimmerHMM_glimmerT_59066-T1
Valid prediction for Augustus_model.g39142.t1
Couldn't classify 37571, 38503
Sorry, prediction pasa_asmbl_38390.p1 fails validation.
(GCG)	 CG	37571-38503	AA	AAA
Valid prediction for snap_scaffold_28-snap.1610-T1
Valid prediction for GlimmerHMM_glimmerT_59075-T1
Valid prediction for Augustus_model.g39136.t1
Valid prediction for GlimmerHMM_glimmerT_59092-T1
Valid prediction for snap_scaffold_28-snap.1639-T1
Valid prediction for GlimmerHMM_glimmerT_59063-T1
Valid prediction for GlimmerHMM_glimmerT_59057-T1
Couldn't classify 142263, 142284
Couldn't classify 142899, 142930
Sorry, prediction pasa_asmbl_38382.p2 fails validation.
(AGC)	 CC	142263-142284	GT	GAG
(TTC)	 AG	142418-142531	GT	GGG
(GCG)	 AG	142657-142797	GT	AGG
(AGG)	 AG	142899-142930	CA	ACC
-recovered pasa_asmbl_38382.p2, internal, 142418, 142531
-recovered pasa_asmbl_38382.p2, internal, 142657, 142797
Valid prediction for snap_scaffold_28-snap.1641-T1
Valid prediction for snap_scaffold_28-snap.1646-T1
Valid prediction for Augustus_model.g39168.t1
Valid prediction for CodingQuarry_transcript_43706-T1
Valid prediction for Augustus_model.g39162.t1
Valid prediction for snap_scaffold_28-snap.1621-T1
Valid prediction for snap_scaffold_28-snap.1585-T1
Valid prediction for snap_scaffold_28-snap.1624-T1
Valid prediction for GlimmerHMM_glimmerT_59071-T1
Valid prediction for GlimmerHMM_glimmerT_59074-T1
Valid prediction for Augustus_model.g39150.t1
Valid prediction for snap_scaffold_28-snap.1589-T1
Valid prediction for Augustus_model.g39135.t1
Valid prediction for snap_scaffold_28-snap.1645-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_59053-T1
Valid prediction for GlimmerHMM_glimmerT_59093-T1
Valid prediction for pasa_asmbl_38394.p1
Valid prediction for snap_scaffold_28-snap.1627-T1
Valid prediction for GlimmerHMM_glimmerT_59056-T1
Valid prediction for Augustus_model.g39148.t1
Valid prediction for snap_scaffold_28-snap.1596-T1
Valid prediction for GlimmerHMM_glimmerT_59079-T1
Valid prediction for GlimmerHMM_glimmerT_59099-T1
Valid prediction for snap_scaffold_28-snap.1615-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for pasa_asmbl_38384.p1
Valid prediction for snap_scaffold_28-snap.1636-T1
Valid prediction for Augustus_model.g39139.t1
Valid prediction for GlimmerHMM_glimmerT_59067-T1
Valid prediction for snap_scaffold_28-snap.1583-T1
Valid prediction for pasa_asmbl_38386.p1
Valid prediction for snap_scaffold_28-snap.1619-T1
Valid prediction for snap_scaffold_28-snap.1593-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_28-snap.1637-T1
Valid prediction for snap_scaffold_28-snap.1617-T1
Valid prediction for snap_scaffold_28-snap.1597-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 41270, rend_intergenic: 37582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43747, rend_intergenic: 42279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45589, rend_intergenic: 45442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52223, rend_intergenic: 49757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54844, rend_intergenic: 52237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62099, rend_intergenic: 55951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66667, rend_intergenic: 62497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85532, rend_intergenic: 67970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94410, rend_intergenic: 90809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108865, rend_intergenic: 99517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114112, rend_intergenic: 110260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122565, rend_intergenic: 114866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137283, rend_intergenic: 123142  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141764, rend_intergenic: 137601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163453, rend_intergenic: 154782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184186, rend_intergenic: 165882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190637, rend_intergenic: 187395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204103, rend_intergenic: 201204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206603, rend_intergenic: 204368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207874, rend_intergenic: 206676  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210973, rend_intergenic: 208976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216815, rend_intergenic: 213988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224284, rend_intergenic: 221951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 255007, rend_intergenic: 251065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 284254, rend_intergenic: 280610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 306168, rend_intergenic: 304048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 308072, rend_intergenic: 306433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 322107, rend_intergenic: 312053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 328444
-exon list size: 958


building trellis

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-found 52 predictions from path traversal
Error with prediction: snap lend_intergenic: 41270, rend_intergenic: 37582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43747, rend_intergenic: 42279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45589, rend_intergenic: 45442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52223, rend_intergenic: 49757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54844, rend_intergenic: 52237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62099, rend_intergenic: 55951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66667, rend_intergenic: 62497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85532, rend_intergenic: 67970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94410, rend_intergenic: 90809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108865, rend_intergenic: 99517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114112, rend_intergenic: 110260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122565, rend_intergenic: 114866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137283, rend_intergenic: 123142  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141764, rend_intergenic: 137601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163453, rend_intergenic: 154782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184186, rend_intergenic: 165882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190637, rend_intergenic: 187395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204103, rend_intergenic: 201204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206603, rend_intergenic: 204368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207874, rend_intergenic: 206676  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210973, rend_intergenic: 208976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216815, rend_intergenic: 213988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224284, rend_intergenic: 221951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 255007, rend_intergenic: 251065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 284254, rend_intergenic: 280610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 306168, rend_intergenic: 304048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 308072, rend_intergenic: 306433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 322107, rend_intergenic: 312053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 32 predictions persist after filtering for low support