-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_28/scaffold_28_6224535-6366819

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39069.t1
Valid prediction for snap_scaffold_28-snap.1419-T1
Valid prediction for GlimmerHMM_glimmerT_58945-T1
Valid prediction for snap_scaffold_28-snap.1411-T1
Valid prediction for Augustus_model.g39070.t1
Valid prediction for Augustus_model.g39068.t1
Valid prediction for snap_scaffold_28-snap.1414-T1
Valid prediction for GlimmerHMM_glimmerT_58948-T1
Valid prediction for snap_scaffold_28-snap.1415-T1
Valid prediction for snap_scaffold_28-snap.1422-T1
Valid prediction for snap_scaffold_28-snap.1401-T1
Valid prediction for GlimmerHMM_glimmerT_58929-T1
Valid prediction for Augustus_model.g39062.t1
Valid prediction for GlimmerHMM_glimmerT_58938-T1
Valid prediction for snap_scaffold_28-snap.1416-T1
Valid prediction for snap_scaffold_28-snap.1412-T1
Valid prediction for snap_scaffold_28-snap.1420-T1
Valid prediction for Augustus_model.g39063.t1
Valid prediction for snap_scaffold_28-snap.1397-T1
Valid prediction for snap_scaffold_28-snap.1410-T1
Valid prediction for GlimmerHMM_glimmerT_58934-T1
Valid prediction for GlimmerHMM_glimmerT_58940-T1
Valid prediction for GlimmerHMM_glimmerT_58932-T1
Valid prediction for snap_scaffold_28-snap.1405-T1
Valid prediction for GlimmerHMM_glimmerT_58924-T1
Valid prediction for GlimmerHMM_glimmerT_58926-T1
Valid prediction for GlimmerHMM_glimmerT_58928-T1
Valid prediction for snap_scaffold_28-snap.1395-T1
Valid prediction for Augustus_model.g39065.t1
Valid prediction for snap_scaffold_28-snap.1425-T1
Valid prediction for snap_scaffold_28-snap.1407-T1
Valid prediction for Augustus_model.g39071.t1
Valid prediction for GlimmerHMM_glimmerT_58936-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_58942-T1
Valid prediction for snap_scaffold_28-snap.1393-T1
Valid prediction for snap_scaffold_28-snap.1394-T1
Valid prediction for GlimmerHMM_glimmerT_58944-T1
Valid prediction for GlimmerHMM_glimmerT_58937-T1
Valid prediction for GlimmerHMM_glimmerT_58939-T1
Valid prediction for snap_scaffold_28-snap.1406-T1
Valid prediction for GlimmerHMM_glimmerT_58946-T1
Valid prediction for GlimmerHMM_glimmerT_58943-T1
Valid prediction for snap_scaffold_28-snap.1396-T1
Valid prediction for Augustus_model.g39059.t1
Valid prediction for Augustus_model.g39061.t1
Valid prediction for snap_scaffold_28-snap.1417-T1
Valid prediction for Augustus_model.g39067.t1
Valid prediction for GlimmerHMM_glimmerT_58925-T1
Valid prediction for snap_scaffold_28-snap.1399-T1
Valid prediction for snap_scaffold_28-snap.1413-T1
Valid prediction for GlimmerHMM_glimmerT_58930-T1
Valid prediction for GlimmerHMM_glimmerT_58923-T1
Valid prediction for snap_scaffold_28-snap.1404-T1
Valid prediction for Augustus_model.g39073.t1
Valid prediction for snap_scaffold_28-snap.1398-T1
Valid prediction for Augustus_model.g39066.t1
Valid prediction for snap_scaffold_28-snap.1409-T1
Valid prediction for snap_scaffold_28-snap.1424-T1
Valid prediction for GlimmerHMM_glimmerT_58947-T1
Valid prediction for snap_scaffold_28-snap.1402-T1
Valid prediction for GlimmerHMM_glimmerT_58933-T1
Valid prediction for Augustus_model.g39072.t1
Valid prediction for snap_scaffold_28-snap.1421-T1
Valid prediction for snap_scaffold_28-snap.1403-T1
Valid prediction for snap_scaffold_28-snap.1423-T1
Valid prediction for snap_scaffold_28-snap.1400-T1
Valid prediction for GlimmerHMM_glimmerT_58941-T1
Valid prediction for snap_scaffold_28-snap.1408-T1
Valid prediction for snap_scaffold_28-snap.1418-T1
Valid prediction for GlimmerHMM_glimmerT_58935-T1
Valid prediction for Augustus_model.g39060.t1
Valid prediction for Augustus_model.g39064.t1
Valid prediction for GlimmerHMM_glimmerT_58927-T1
Valid prediction for GlimmerHMM_glimmerT_58931-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 35964, rend_intergenic: 31549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74887, rend_intergenic: 69190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76588, rend_intergenic: 75769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105187, rend_intergenic: 103700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107226, rend_intergenic: 105766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119281, rend_intergenic: 117013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124401, rend_intergenic: 123672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133612, rend_intergenic: 131242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 142285
-exon list size: 231


building trellis

0.4    
0.9    
1.3    
1.7    
2.1    
2.6    
3.0    
3.4    
3.9    
4.3    
4.7    
5.2    
5.6    
6.0    
6.4    
6.9    
7.3    
7.7    
8.2    
8.6    
9.0    
9.4    
9.9    
10.3    
10.7    
11.2    
11.6    
12.0    
12.4    
12.9    
13.3    
13.7    
14.2    
14.6    
15.0    
15.5    
15.9    
16.3    
16.7    
17.2    
17.6    
18.0    
18.5    
18.9    
19.3    
19.7    
20.2    
20.6    
21.0    
21.5    
21.9    
22.3    
22.7    
23.2    
23.6    
24.0    
24.5    
24.9    
25.3    
25.8    
26.2    
26.6    
27.0    
27.5    
27.9    
28.3    
28.8    
29.2    
29.6    
30.0    
30.5    
30.9    
31.3    
31.8    
32.2    
32.6    
33.0    
33.5    
33.9    
34.3    
34.8    
35.2    
35.6    
36.1    
36.5    
36.9    
37.3    
37.8    
38.2    
38.6    
39.1    
39.5    
39.9    
40.3    
40.8    
41.2    
41.6    
42.1    
42.5    
42.9    
43.3    
43.8    
44.2    
44.6    
45.1    
45.5    
45.9    
46.4    
46.8    
47.2    
47.6    
48.1    
48.5    
48.9    
49.4    
49.8    
50.2    
50.6    
51.1    
51.5    
51.9    
52.4    
52.8    
53.2    
53.6    
54.1    
54.5    
54.9    
55.4    
55.8    
56.2    
56.7    
57.1    
57.5    
57.9    
58.4    
58.8    
59.2    
59.7    
60.1    
60.5    
60.9    
61.4    
61.8    
62.2    
62.7    
63.1    
63.5    
63.9    
64.4    
64.8    
65.2    
65.7    
66.1    
66.5    
67.0    
67.4    
67.8    
68.2    
68.7    
69.1    
69.5    
70.0    
70.4    
70.8    
71.2    
71.7    
72.1    
72.5    
73.0    
73.4    
73.8    
74.2    
74.7    
75.1    
75.5    
76.0    
76.4    
76.8    
77.3    
77.7    
78.1    
78.5    
79.0    
79.4    
79.8    
80.3    
80.7    
81.1    
81.5    
82.0    
82.4    
82.8    
83.3    
83.7    
84.1    
84.5    
85.0    
85.4    
85.8    
86.3    
86.7    
87.1    
87.6    
88.0    
88.4    
88.8    
89.3    
89.7    
90.1    
90.6    
91.0    
91.4    
91.8    
92.3    
92.7    
93.1    
93.6    
94.0    
94.4    
94.8    
95.3    
95.7    
96.1    
96.6    
97.0    
97.4    
97.9    
98.3    
98.7    
99.1    
99.6    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 35964, rend_intergenic: 31549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74887, rend_intergenic: 69190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76588, rend_intergenic: 75769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105187, rend_intergenic: 103700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107226, rend_intergenic: 105766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119281, rend_intergenic: 117013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124401, rend_intergenic: 123672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133612, rend_intergenic: 131242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support