-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_28/scaffold_28_1859458-1982237

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_28-snap.451-T1
Valid prediction for snap_scaffold_28-snap.461-T1
Valid prediction for GlimmerHMM_glimmerT_58250-T1
Valid prediction for snap_scaffold_28-snap.470-T1
Valid prediction for snap_scaffold_28-snap.455-T1
Valid prediction for snap_scaffold_28-snap.450-T1
Valid prediction for GlimmerHMM_glimmerT_58240-T1
Valid prediction for GlimmerHMM_glimmerT_58245-T1
Valid prediction for snap_scaffold_28-snap.454-T1
Valid prediction for Augustus_model.g38559.t1
Valid prediction for Augustus_model.g38555.t1
Valid prediction for GlimmerHMM_glimmerT_58242-T1
Valid prediction for snap_scaffold_28-snap.476-T1
Valid prediction for snap_scaffold_28-snap.472-T1
Valid prediction for GlimmerHMM_glimmerT_58237-T1
Valid prediction for snap_scaffold_28-snap.465-T1
Valid prediction for GlimmerHMM_glimmerT_58231-T1
Valid prediction for snap_scaffold_28-snap.446-T1
Valid prediction for GlimmerHMM_glimmerT_58235-T1
Valid prediction for GlimmerHMM_glimmerT_58243-T1
Valid prediction for GlimmerHMM_glimmerT_58253-T1
Valid prediction for snap_scaffold_28-snap.471-T1
Valid prediction for snap_scaffold_28-snap.473-T1
Valid prediction for snap_scaffold_28-snap.469-T1
Valid prediction for snap_scaffold_28-snap.457-T1
Valid prediction for snap_scaffold_28-snap.478-T1
Valid prediction for GlimmerHMM_glimmerT_58247-T1
Valid prediction for GlimmerHMM_glimmerT_58239-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_58234-T1
Valid prediction for GlimmerHMM_glimmerT_58236-T1
Valid prediction for GlimmerHMM_glimmerT_58232-T1
Valid prediction for snap_scaffold_28-snap.456-T1
Valid prediction for GlimmerHMM_glimmerT_58238-T1
Valid prediction for snap_scaffold_28-snap.460-T1
Valid prediction for GlimmerHMM_glimmerT_58241-T1
Valid prediction for snap_scaffold_28-snap.443-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_58251-T1
Valid prediction for GlimmerHMM_glimmerT_58246-T1
Valid prediction for snap_scaffold_28-snap.468-T1
Valid prediction for snap_scaffold_28-snap.445-T1
Valid prediction for snap_scaffold_28-snap.444-T1
Valid prediction for snap_scaffold_28-snap.474-T1
Valid prediction for Augustus_model.g38558.t1
Valid prediction for snap_scaffold_28-snap.458-T1
Valid prediction for Augustus_model.g38557.t1
Valid prediction for snap_scaffold_28-snap.449-T1
Valid prediction for Augustus_model.g38548.t1
Valid prediction for Augustus_model.g38552.t1
Valid prediction for GlimmerHMM_glimmerT_58254-T1
Valid prediction for snap_scaffold_28-snap.466-T1
Valid prediction for Augustus_model.g38550.t1
Valid prediction for GlimmerHMM_glimmerT_58249-T1
Valid prediction for Augustus_model.g38549.t1
Valid prediction for Augustus_model.g38556.t1
Valid prediction for Augustus_model.g38547.t1
Valid prediction for snap_scaffold_28-snap.463-T1
Valid prediction for snap_scaffold_28-snap.447-T1
Valid prediction for GlimmerHMM_glimmerT_58230-T1
Valid prediction for snap_scaffold_28-snap.464-T1
Valid prediction for snap_scaffold_28-snap.467-T1
Valid prediction for snap_scaffold_28-snap.475-T1
Valid prediction for GlimmerHMM_glimmerT_58248-T1
Valid prediction for GlimmerHMM_glimmerT_58229-T1
Valid prediction for GlimmerHMM_glimmerT_58233-T1
Valid prediction for snap_scaffold_28-snap.462-T1
Valid prediction for Augustus_model.g38551.t1
Valid prediction for GlimmerHMM_glimmerT_58252-T1
Valid prediction for GlimmerHMM_glimmerT_58244-T1
Valid prediction for Augustus_model.g38553.t1
Valid prediction for snap_scaffold_28-snap.477-T1
Valid prediction for snap_scaffold_28-snap.459-T1
Valid prediction for snap_scaffold_28-snap.452-T1
Valid prediction for snap_scaffold_28-snap.448-T1
Valid prediction for Augustus_model.g38554.t1
Valid prediction for snap_scaffold_28-snap.453-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15648, rend_intergenic: 11111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33570, rend_intergenic: 18731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53950, rend_intergenic: 49293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74863, rend_intergenic: 71067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80479, rend_intergenic: 78101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 122780
-exon list size: 228


building trellis

0.4    
0.9    
1.3    
1.7    
2.2    
2.6    
3.0    
3.5    
3.9    
4.3    
4.8    
5.2    
5.7    
6.1    
6.5    
7.0    
7.4    
7.8    
8.3    
8.7    
9.1    
9.6    
10.0    
10.4    
10.9    
11.3    
11.7    
12.2    
12.6    
13.0    
13.5    
13.9    
14.3    
14.8    
15.2    
15.7    
16.1    
16.5    
17.0    
17.4    
17.8    
18.3    
18.7    
19.1    
19.6    
20.0    
20.4    
20.9    
21.3    
21.7    
22.2    
22.6    
23.0    
23.5    
23.9    
24.3    
24.8    
25.2    
25.7    
26.1    
26.5    
27.0    
27.4    
27.8    
28.3    
28.7    
29.1    
29.6    
30.0    
30.4    
30.9    
31.3    
31.7    
32.2    
32.6    
33.0    
33.5    
33.9    
34.3    
34.8    
35.2    
35.7    
36.1    
36.5    
37.0    
37.4    
37.8    
38.3    
38.7    
39.1    
39.6    
40.0    
40.4    
40.9    
41.3    
41.7    
42.2    
42.6    
43.0    
43.5    
43.9    
44.3    
44.8    
45.2    
45.7    
46.1    
46.5    
47.0    
47.4    
47.8    
48.3    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.7    
52.2    
52.6    
53.0    
53.5    
53.9    
54.3    
54.8    
55.2    
55.7    
56.1    
56.5    
57.0    
57.4    
57.8    
58.3    
58.7    
59.1    
59.6    
60.0    
60.4    
60.9    
61.3    
61.7    
62.2    
62.6    
63.0    
63.5    
63.9    
64.3    
64.8    
65.2    
65.7    
66.1    
66.5    
67.0    
67.4    
67.8    
68.3    
68.7    
69.1    
69.6    
70.0    
70.4    
70.9    
71.3    
71.7    
72.2    
72.6    
73.0    
73.5    
73.9    
74.3    
74.8    
75.2    
75.7    
76.1    
76.5    
77.0    
77.4    
77.8    
78.3    
78.7    
79.1    
79.6    
80.0    
80.4    
80.9    
81.3    
81.7    
82.2    
82.6    
83.0    
83.5    
83.9    
84.3    
84.8    
85.2    
85.7    
86.1    
86.5    
87.0    
87.4    
87.8    
88.3    
88.7    
89.1    
89.6    
90.0    
90.4    
90.9    
91.3    
91.7    
92.2    
92.6    
93.0    
93.5    
93.9    
94.3    
94.8    
95.2    
95.7    
96.1    
96.5    
97.0    
97.4    
97.8    
98.3    
98.7    
99.1    
99.6    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 15648, rend_intergenic: 11111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33570, rend_intergenic: 18731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53950, rend_intergenic: 49293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74863, rend_intergenic: 71067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80479, rend_intergenic: 78101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support