-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2758

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 798, 1054
Sorry, prediction Augustus_model.g40981.t1 fails validation.
(ATG)	 AG	233-582	GT	AGG
(GTC)	 AG	798-1054	GT	GGG
add_exon() Sorry, Augustus_model.g40981.t1 233-582-initial-1 is invalid.
-recovered Augustus_model.g40981.t1, initial, 233, 582
-recovered Augustus_model.g40981.t1, internal, 233, 582
-recovered Augustus_model.g40981.t1, internal, 798, 1054
Couldn't classify 798, 1086
Sorry, prediction snap_scaffold_2758-snap.1-T1 fails validation.
(ATG)	 AG	233-582	GT	AGG
(GTC)	 AG	798-1086	GT	TGG
add_exon() Sorry, snap_scaffold_2758-snap.1-T1 233-582-initial-1 is invalid.
-recovered snap_scaffold_2758-snap.1-T1, initial, 233, 582
-recovered snap_scaffold_2758-snap.1-T1, internal, 233, 582
-recovered snap_scaffold_2758-snap.1-T1, internal, 798, 1086
Couldn't classify 798, 981
Sorry, prediction GlimmerHMM_glimmerT_61692-T1 fails validation.
(ATG)	 AC	292-582	GT	AGG
(GTC)	 AG	798-981	GT	CTG
-recovered GlimmerHMM_glimmerT_61692-T1, initial, 292, 582
-recovered GlimmerHMM_glimmerT_61692-T1, internal, 798, 981

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1128
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support