-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_275

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60117-T1
Couldn't classify 41, 103
Couldn't classify 8432, 8567
Sorry, prediction snap_scaffold_275-snap.1-T1 fails validation.
(ACT)	 AG	41-103	GT	CAG
(GCG)	 AG	4572-4619	GT	CGG
(GGC)	 AG	5001-5158	GT	AGG
(TGC)	 AG	5685-5831	GT	AGG
(CGT)	 AG	8073-8235	GT	AGG
(CAG)	 AG	8432-8567	GT	TGG
-recovered snap_scaffold_275-snap.1-T1, internal, 41, 103
-recovered snap_scaffold_275-snap.1-T1, internal, 4572, 4619
-recovered snap_scaffold_275-snap.1-T1, internal, 5001, 5158
-recovered snap_scaffold_275-snap.1-T1, internal, 5685, 5831
-recovered snap_scaffold_275-snap.1-T1, internal, 8073, 8235
-recovered snap_scaffold_275-snap.1-T1, internal, 8432, 8567
Couldn't classify 8432, 8567
Sorry, prediction Augustus_model.g39809.t1 fails validation.
(ATG)	 TT	8050-8235	GT	AGG
(CAG)	 AG	8432-8567	GT	TGG
-recovered Augustus_model.g39809.t1, initial, 8050, 8235
-recovered Augustus_model.g39809.t1, internal, 8432, 8567
Couldn't classify 8432, 8567
Sorry, prediction GlimmerHMM_glimmerT_60118-T1 fails validation.
(ATG)	 TC	5824-5831	GT	AGG
(CGT)	 AG	8073-8235	GT	AGG
(CAG)	 AG	8432-8567	GT	TGG
-recovered GlimmerHMM_glimmerT_60118-T1, initial, 5824, 5831
-recovered GlimmerHMM_glimmerT_60118-T1, internal, 8073, 8235
-recovered GlimmerHMM_glimmerT_60118-T1, internal, 8432, 8567

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8699
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support