-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_273

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_273-snap.1-T1
Valid prediction for snap_scaffold_273-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_60114-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5763, 5786
Sorry, prediction snap_scaffold_273-snap.2-T1 fails validation.
(ATG)	 AC	4755-5063	GT	TGG
(AGT)	 AG	5763-5786	GT	AGG
-recovered snap_scaffold_273-snap.2-T1, initial, 4755, 5063
-recovered snap_scaffold_273-snap.2-T1, internal, 5763, 5786
Valid prediction for GlimmerHMM_glimmerT_60115-T1
Valid prediction for snap_scaffold_273-snap.3-T1
Valid prediction for Augustus_model.g39806.t1
Valid prediction for snap_scaffold_273-snap.5-T1
Valid prediction for Augustus_model.g39807.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4230, rend_intergenic: 2938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8377, rend_intergenic: 4261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8723
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 4230, rend_intergenic: 2938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8377, rend_intergenic: 4261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support