-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2727

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61682-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61682-T1 29-267-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_61681-T1
Couldn't classify 29, 172
Couldn't classify 584, 774
Sorry, prediction snap_scaffold_2727-snap.1-T1 fails validation.
(GTC)	 AG	29-172	GT	AGG
(TGG)	 AG	302-427	GT	AGG
(TGG)	 AG	584-774	GT	GGG
-recovered snap_scaffold_2727-snap.1-T1, internal, 29, 172
-recovered snap_scaffold_2727-snap.1-T1, internal, 302, 427
-recovered snap_scaffold_2727-snap.1-T1, internal, 584, 774
Couldn't classify 1, 172
Couldn't classify 584, 774
Sorry, prediction Augustus_model.g40975.t1 fails validation.
(CCA)	 TC	1-172	GT	AGG
(TGG)	 AG	302-427	GT	AGG
(TGG)	 AG	584-774	GT	GGG
-recovered Augustus_model.g40975.t1, internal, 302, 427
-recovered Augustus_model.g40975.t1, internal, 584, 774
Couldn't classify 46, 172
Couldn't classify 584, 774
Sorry, prediction pasa_asmbl_37236.p1 fails validation.
(GTT)	 GC	46-172	GT	AGG
(TGG)	 AG	302-427	GT	AGG
(TGG)	 AG	584-774	GT	GGG
-recovered pasa_asmbl_37236.p1, internal, 302, 427
-recovered pasa_asmbl_37236.p1, internal, 584, 774

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1135
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support