-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2720

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 335, 490
Couldn't classify 769, 939
Sorry, prediction pasa_asmbl_37234.p1 fails validation.
(GAG)	 TG	335-490	GT	GGG
(CCT)	 AG	769-939	AA	ACA
Couldn't classify 100, 218
Sorry, prediction GlimmerHMM_glimmerT_61679-T1 fails validation.
(AGA)	 AG	100-218	GT	AGG
(GTG)	 AG	330-490	GT	GGG
(CCT)	 AG	769-945	GA	AAG
-recovered GlimmerHMM_glimmerT_61679-T1, terminal, 769, 945
-recovered GlimmerHMM_glimmerT_61679-T1, internal, 100, 218
-recovered GlimmerHMM_glimmerT_61679-T1, internal, 330, 490
Couldn't classify 77, 218
Couldn't classify 769, 941
Sorry, prediction snap_scaffold_2720-snap.1-T1 fails validation.
(TGC)	 AG	77-218	GT	AGG
(GTG)	 AG	330-571	GT	CAG
(CCT)	 AG	769-941	GT	AAG
-recovered snap_scaffold_2720-snap.1-T1, internal, 77, 218
-recovered snap_scaffold_2720-snap.1-T1, internal, 330, 571
-recovered snap_scaffold_2720-snap.1-T1, internal, 769, 941
Couldn't classify 100, 218
Couldn't classify 769, 941
Sorry, prediction Augustus_model.g40972.t1 fails validation.
(AGA)	 AG	100-218	GT	AGG
(GTG)	 AG	330-490	GT	GGG
(CCT)	 AG	769-941	GT	AAG
-recovered Augustus_model.g40972.t1, internal, 100, 218
-recovered Augustus_model.g40972.t1, internal, 330, 490
-recovered Augustus_model.g40972.t1, internal, 769, 941

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1138
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support