-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_271

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39804.t1
Valid prediction for snap_scaffold_271-snap.1-T1
Couldn't classify 2, 54
Sorry, prediction pasa_asmbl_37227.p1 fails validation.
(CAG)	 T	2-54	GT	AGG
(GGA)	 AG	491-1016	TG	AAT
-recovered pasa_asmbl_37227.p1, terminal, 491, 1016
Valid prediction for snap_scaffold_271-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60110-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60110-T1 491-1016-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_60111-T1
Couldn't classify 1, 54
Sorry, prediction HiQ_model.g39803.t1 fails validation.
(CCA)	 CT	1-54	GT	AGG
(GGA)	 AG	491-1016	TG	AAT
-recovered HiQ_model.g39803.t1, terminal, 491, 1016

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8730
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support