-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_270

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8173, 8270
Sorry, prediction snap_scaffold_270-snap.2-T1 fails validation.
(ATG)	 AG	1377-1496	GT	GGG
(GCC)	 AG	1614-1765	GT	AGG
(AAG)	 AG	2091-2281	GT	AGG
(TGA)	 AG	2841-3011	GT	AGG
(TGG)	 AG	8173-8270	GT	AGG
-recovered snap_scaffold_270-snap.2-T1, initial, 1377, 1496
-recovered snap_scaffold_270-snap.2-T1, internal, 1377, 1496
-recovered snap_scaffold_270-snap.2-T1, internal, 1614, 1765
-recovered snap_scaffold_270-snap.2-T1, internal, 2091, 2281
-recovered snap_scaffold_270-snap.2-T1, internal, 2841, 3011
-recovered snap_scaffold_270-snap.2-T1, internal, 8173, 8270

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 532, 608
Couldn't classify 8024, 8147
Sorry, prediction snap_scaffold_270-snap.1-T1 fails validation.
(ACG)	 AG	532-608	GT	ACG
(GGT)	 AG	1043-1079	GT	AGG
(GTC)	 AG	1998-2095	GT	GGG
(AAG)	 AG	5744-5898	GT	AGG
(CGC)	 AG	8024-8147	GT	TGG
-recovered snap_scaffold_270-snap.1-T1, internal, 532, 608
-recovered snap_scaffold_270-snap.1-T1, internal, 1043, 1079
-recovered snap_scaffold_270-snap.1-T1, internal, 1998, 2095
-recovered snap_scaffold_270-snap.1-T1, internal, 5744, 5898
-recovered snap_scaffold_270-snap.1-T1, internal, 8024, 8147
Couldn't classify 532, 608
Sorry, prediction GlimmerHMM_glimmerT_60109-T1 fails validation.
(ACG)	 AG	532-608	GT	ACG
(GGT)	 AG	1043-1079	GT	AGG
(GTC)	 AG	1998-2095	GT	GGG
(AAG)	 AG	5744-5902	GC	GAG
-recovered GlimmerHMM_glimmerT_60109-T1, terminal, 5744, 5902
-recovered GlimmerHMM_glimmerT_60109-T1, internal, 532, 608
-recovered GlimmerHMM_glimmerT_60109-T1, internal, 1043, 1079
-recovered GlimmerHMM_glimmerT_60109-T1, internal, 1998, 2095
-recovered GlimmerHMM_glimmerT_60109-T1, internal, 5744, 5902
Couldn't classify 532, 608
Sorry, prediction Augustus_model.g39802.t1 fails validation.
(ACG)	 AG	532-608	GT	ACG
(GGT)	 AG	1043-1079	GT	AGG
(GTC)	 AG	1998-2095	GT	GGG
(AAG)	 AG	5744-5898	GT	AGG
(CTC)	 AG	7540-7656	GT	GTG
(CGC)	 AG	8024-8159	GT	AGG
(TGC)	 AG	8676-8714	TG	AAT
-recovered Augustus_model.g39802.t1, terminal, 8676, 8714
-recovered Augustus_model.g39802.t1, internal, 532, 608
-recovered Augustus_model.g39802.t1, internal, 1043, 1079
-recovered Augustus_model.g39802.t1, internal, 1998, 2095
-recovered Augustus_model.g39802.t1, internal, 5744, 5898
-recovered Augustus_model.g39802.t1, internal, 7540, 7656
-recovered Augustus_model.g39802.t1, internal, 8024, 8159

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8201, rend_intergenic: 1377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8732
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8201, rend_intergenic: 1377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support