-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_27/scaffold_27_8739524-8911326

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_57765-T1
Valid prediction for snap_scaffold_27-snap.1997-T1
Valid prediction for snap_scaffold_27-snap.2023-T1
Valid prediction for snap_scaffold_27-snap.2039-T1
Valid prediction for GlimmerHMM_glimmerT_57770-T1
Valid prediction for snap_scaffold_27-snap.2029-T1
Valid prediction for Augustus_model.g38254.t1
Valid prediction for GlimmerHMM_glimmerT_57763-T1
Valid prediction for snap_scaffold_27-snap.2035-T1
Valid prediction for snap_scaffold_27-snap.2042-T1
Valid prediction for GlimmerHMM_glimmerT_57759-T1
Valid prediction for Augustus_model.g38249.t1
Valid prediction for snap_scaffold_27-snap.2012-T1
Valid prediction for GlimmerHMM_glimmerT_57766-T1
Valid prediction for GlimmerHMM_glimmerT_57754-T1
Valid prediction for Augustus_model.g38250.t1
Valid prediction for snap_scaffold_27-snap.2003-T1
Valid prediction for GlimmerHMM_glimmerT_57768-T1
Valid prediction for snap_scaffold_27-snap.2030-T1
Valid prediction for Augustus_model.g38243.t1
Valid prediction for snap_scaffold_27-snap.2037-T1
Valid prediction for snap_scaffold_27-snap.2018-T1
Valid prediction for snap_scaffold_27-snap.2010-T1
Valid prediction for snap_scaffold_27-snap.1998-T1
Valid prediction for snap_scaffold_27-snap.2016-T1
Valid prediction for snap_scaffold_27-snap.2024-T1
Valid prediction for snap_scaffold_27-snap.2036-T1
Valid prediction for snap_scaffold_27-snap.2032-T1
Valid prediction for snap_scaffold_27-snap.2014-T1
Valid prediction for Augustus_model.g38253.t1
Valid prediction for snap_scaffold_27-snap.2040-T1
Valid prediction for snap_scaffold_27-snap.2034-T1
Valid prediction for snap_scaffold_27-snap.2025-T1
Valid prediction for snap_scaffold_27-snap.2026-T1
Valid prediction for snap_scaffold_27-snap.2000-T1
Valid prediction for snap_scaffold_27-snap.2005-T1
Valid prediction for Augustus_model.g38245.t1
Valid prediction for snap_scaffold_27-snap.2027-T1
Valid prediction for GlimmerHMM_glimmerT_57758-T1
Valid prediction for snap_scaffold_27-snap.2008-T1
Valid prediction for Augustus_model.g38252.t1
Valid prediction for GlimmerHMM_glimmerT_57750-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_27-snap.2006-T1
Valid prediction for snap_scaffold_27-snap.2038-T1
Valid prediction for snap_scaffold_27-snap.2022-T1
Valid prediction for GlimmerHMM_glimmerT_57751-T1
Valid prediction for snap_scaffold_27-snap.2033-T1
Valid prediction for snap_scaffold_27-snap.2013-T1
Valid prediction for snap_scaffold_27-snap.2043-T1
Valid prediction for Augustus_model.g38244.t1
Valid prediction for Augustus_model.g38247.t1
Valid prediction for snap_scaffold_27-snap.2031-T1
Valid prediction for Augustus_model.g38251.t1
Valid prediction for Augustus_model.g38246.t1
Valid prediction for snap_scaffold_27-snap.2019-T1
Valid prediction for GlimmerHMM_glimmerT_57752-T1
Valid prediction for GlimmerHMM_glimmerT_57762-T1
Valid prediction for snap_scaffold_27-snap.2001-T1
Valid prediction for GlimmerHMM_glimmerT_57757-T1
Valid prediction for snap_scaffold_27-snap.2002-T1
Valid prediction for snap_scaffold_27-snap.2021-T1
Valid prediction for snap_scaffold_27-snap.2017-T1
Valid prediction for GlimmerHMM_glimmerT_57761-T1
Valid prediction for GlimmerHMM_glimmerT_57755-T1
Valid prediction for snap_scaffold_27-snap.2044-T1
Valid prediction for snap_scaffold_27-snap.2009-T1
Valid prediction for GlimmerHMM_glimmerT_57767-T1
Valid prediction for GlimmerHMM_glimmerT_57760-T1
Valid prediction for GlimmerHMM_glimmerT_57769-T1
Valid prediction for snap_scaffold_27-snap.2007-T1
Valid prediction for GlimmerHMM_glimmerT_57756-T1
Valid prediction for snap_scaffold_27-snap.2045-T1
Valid prediction for GlimmerHMM_glimmerT_57753-T1
Valid prediction for Augustus_model.g38248.t1
Valid prediction for snap_scaffold_27-snap.2004-T1
Valid prediction for snap_scaffold_27-snap.2011-T1
Valid prediction for snap_scaffold_27-snap.2028-T1
Valid prediction for snap_scaffold_27-snap.2015-T1
Valid prediction for snap_scaffold_27-snap.2041-T1
Valid prediction for snap_scaffold_27-snap.2020-T1
Valid prediction for GlimmerHMM_glimmerT_57764-T1
Valid prediction for snap_scaffold_27-snap.1999-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11131, rend_intergenic: 6665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17165, rend_intergenic: 13462  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32440, rend_intergenic: 30501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38887, rend_intergenic: 36438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39479, rend_intergenic: 39273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53758, rend_intergenic: 52542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55187, rend_intergenic: 54042  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63722, rend_intergenic: 60107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66393, rend_intergenic: 64173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73367, rend_intergenic: 70811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84899, rend_intergenic: 73581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101995, rend_intergenic: 97912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109089, rend_intergenic: 107656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110255, rend_intergenic: 109455  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115778, rend_intergenic: 111884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131651, rend_intergenic: 125431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160788, rend_intergenic: 150632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 171803
-exon list size: 280


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.3    
4.6    
5.0    
5.3    
5.7    
6.0    
6.4    
6.7    
7.1    
7.4    
7.8    
8.2    
8.5    
8.9    
9.2    
9.6    
9.9    
10.3    
10.6    
11.0    
11.3    
11.7    
12.1    
12.4    
12.8    
13.1    
13.5    
13.8    
14.2    
14.5    
14.9    
15.2    
15.6    
16.0    
16.3    
16.7    
17.0    
17.4    
17.7    
18.1    
18.4    
18.8    
19.1    
19.5    
19.9    
20.2    
20.6    
20.9    
21.3    
21.6    
22.0    
22.3    
22.7    
23.0    
23.4    
23.8    
24.1    
24.5    
24.8    
25.2    
25.5    
25.9    
26.2    
26.6    
27.0    
27.3    
27.7    
28.0    
28.4    
28.7    
29.1    
29.4    
29.8    
30.1    
30.5    
30.9    
31.2    
31.6    
31.9    
32.3    
32.6    
33.0    
33.3    
33.7    
34.0    
34.4    
34.8    
35.1    
35.5    
35.8    
36.2    
36.5    
36.9    
37.2    
37.6    
37.9    
38.3    
38.7    
39.0    
39.4    
39.7    
40.1    
40.4    
40.8    
41.1    
41.5    
41.8    
42.2    
42.6    
42.9    
43.3    
43.6    
44.0    
44.3    
44.7    
45.0    
45.4    
45.7    
46.1    
46.5    
46.8    
47.2    
47.5    
47.9    
48.2    
48.6    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.4    
51.8    
52.1    
52.5    
52.8    
53.2    
53.5    
53.9    
54.3    
54.6    
55.0    
55.3    
55.7    
56.0    
56.4    
56.7    
57.1    
57.4    
57.8    
58.2    
58.5    
58.9    
59.2    
59.6    
59.9    
60.3    
60.6    
61.0    
61.3    
61.7    
62.1    
62.4    
62.8    
63.1    
63.5    
63.8    
64.2    
64.5    
64.9    
65.2    
65.6    
66.0    
66.3    
66.7    
67.0    
67.4    
67.7    
68.1    
68.4    
68.8    
69.1    
69.5    
69.9    
70.2    
70.6    
70.9    
71.3    
71.6    
72.0    
72.3    
72.7    
73.0    
73.4    
73.8    
74.1    
74.5    
74.8    
75.2    
75.5    
75.9    
76.2    
76.6    
77.0    
77.3    
77.7    
78.0    
78.4    
78.7    
79.1    
79.4    
79.8    
80.1    
80.5    
80.9    
81.2    
81.6    
81.9    
82.3    
82.6    
83.0    
83.3    
83.7    
84.0    
84.4    
84.8    
85.1    
85.5    
85.8    
86.2    
86.5    
86.9    
87.2    
87.6    
87.9    
88.3    
88.7    
89.0    
89.4    
89.7    
90.1    
90.4    
90.8    
91.1    
91.5    
91.8    
92.2    
92.6    
92.9    
93.3    
93.6    
94.0    
94.3    
94.7    
95.0    
95.4    
95.7    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 11131, rend_intergenic: 6665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17165, rend_intergenic: 13462  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32440, rend_intergenic: 30501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38887, rend_intergenic: 36438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39479, rend_intergenic: 39273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53758, rend_intergenic: 52542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55187, rend_intergenic: 54042  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63722, rend_intergenic: 60107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66393, rend_intergenic: 64173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73367, rend_intergenic: 70811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84899, rend_intergenic: 73581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101995, rend_intergenic: 97912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109089, rend_intergenic: 107656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110255, rend_intergenic: 109455  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115778, rend_intergenic: 111884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131651, rend_intergenic: 125431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160788, rend_intergenic: 150632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support