-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_27/scaffold_27_8517589-8743007

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_57743-T1
Valid prediction for GlimmerHMM_glimmerT_57740-T1
Valid prediction for Augustus_model.g38239.t1
Valid prediction for GlimmerHMM_glimmerT_57732-T1
Valid prediction for snap_scaffold_27-snap.1976-T1
Valid prediction for Augustus_model.g38240.t1
Valid prediction for snap_scaffold_27-snap.1962-T1
Valid prediction for GlimmerHMM_glimmerT_57733-T1
Valid prediction for snap_scaffold_27-snap.1972-T1
Valid prediction for snap_scaffold_27-snap.1993-T1
Valid prediction for snap_scaffold_27-snap.1984-T1
Valid prediction for snap_scaffold_27-snap.1961-T1
Valid prediction for snap_scaffold_27-snap.1970-T1
Valid prediction for snap_scaffold_27-snap.1980-T1
Valid prediction for GlimmerHMM_glimmerT_57737-T1
Valid prediction for snap_scaffold_27-snap.1996-T1
Valid prediction for GlimmerHMM_glimmerT_57736-T1
Valid prediction for snap_scaffold_27-snap.1983-T1
Valid prediction for snap_scaffold_27-snap.1966-T1
Valid prediction for snap_scaffold_27-snap.1959-T1
Valid prediction for snap_scaffold_27-snap.1986-T1
Valid prediction for snap_scaffold_27-snap.1965-T1
Valid prediction for snap_scaffold_27-snap.1957-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_27-snap.1981-T1
Valid prediction for GlimmerHMM_glimmerT_57746-T1
Valid prediction for Augustus_model.g38242.t1
Valid prediction for snap_scaffold_27-snap.1979-T1
Valid prediction for snap_scaffold_27-snap.1975-T1
Valid prediction for GlimmerHMM_glimmerT_57734-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_57735-T1
Valid prediction for snap_scaffold_27-snap.1963-T1
Valid prediction for GlimmerHMM_glimmerT_57748-T1
Valid prediction for snap_scaffold_27-snap.1973-T1
Valid prediction for GlimmerHMM_glimmerT_57747-T1
Valid prediction for snap_scaffold_27-snap.1971-T1
Valid prediction for snap_scaffold_27-snap.1968-T1
Valid prediction for snap_scaffold_27-snap.1989-T1
Valid prediction for snap_scaffold_27-snap.1985-T1
Valid prediction for snap_scaffold_27-snap.1992-T1
Valid prediction for snap_scaffold_27-snap.1995-T1
Valid prediction for snap_scaffold_27-snap.1994-T1
Valid prediction for snap_scaffold_27-snap.1988-T1
Valid prediction for GlimmerHMM_glimmerT_57745-T1
Valid prediction for snap_scaffold_27-snap.1974-T1
Valid prediction for GlimmerHMM_glimmerT_57731-T1
Valid prediction for GlimmerHMM_glimmerT_57738-T1
Valid prediction for GlimmerHMM_glimmerT_57741-T1
Valid prediction for snap_scaffold_27-snap.1978-T1
Valid prediction for snap_scaffold_27-snap.1967-T1
Valid prediction for GlimmerHMM_glimmerT_57742-T1
Valid prediction for snap_scaffold_27-snap.1982-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_27-snap.1977-T1
Valid prediction for snap_scaffold_27-snap.1964-T1
Valid prediction for snap_scaffold_27-snap.1987-T1
Valid prediction for GlimmerHMM_glimmerT_57739-T1
Valid prediction for snap_scaffold_27-snap.1990-T1
Valid prediction for Augustus_model.g38241.t1
Valid prediction for snap_scaffold_27-snap.1960-T1
Valid prediction for snap_scaffold_27-snap.1969-T1
Valid prediction for snap_scaffold_27-snap.1991-T1
Valid prediction for snap_scaffold_27-snap.1958-T1
Valid prediction for GlimmerHMM_glimmerT_57744-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18350, rend_intergenic: 14233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21018, rend_intergenic: 20120  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33770, rend_intergenic: 29103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42503, rend_intergenic: 34113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43601, rend_intergenic: 43297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45730, rend_intergenic: 44875  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59255, rend_intergenic: 55304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217334, rend_intergenic: 212893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222026, rend_intergenic: 218813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 225419
-exon list size: 205


building trellis

0.5    
1.0    
1.4    
1.9    
2.4    
2.9    
3.4    
3.9    
4.3    
4.8    
5.3    
5.8    
6.3    
6.8    
7.2    
7.7    
8.2    
8.7    
9.2    
9.7    
10.1    
10.6    
11.1    
11.6    
12.1    
12.6    
13.0    
13.5    
14.0    
14.5    
15.0    
15.5    
15.9    
16.4    
16.9    
17.4    
17.9    
18.4    
18.8    
19.3    
19.8    
20.3    
20.8    
21.3    
21.7    
22.2    
22.7    
23.2    
23.7    
24.2    
24.6    
25.1    
25.6    
26.1    
26.6    
27.1    
27.5    
28.0    
28.5    
29.0    
29.5    
30.0    
30.4    
30.9    
31.4    
31.9    
32.4    
32.9    
33.3    
33.8    
34.3    
34.8    
35.3    
35.7    
36.2    
36.7    
37.2    
37.7    
38.2    
38.6    
39.1    
39.6    
40.1    
40.6    
41.1    
41.5    
42.0    
42.5    
43.0    
43.5    
44.0    
44.4    
44.9    
45.4    
45.9    
46.4    
46.9    
47.3    
47.8    
48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.2    
52.7    
53.1    
53.6    
54.1    
54.6    
55.1    
55.6    
56.0    
56.5    
57.0    
57.5    
58.0    
58.5    
58.9    
59.4    
59.9    
60.4    
60.9    
61.4    
61.8    
62.3    
62.8    
63.3    
63.8    
64.3    
64.7    
65.2    
65.7    
66.2    
66.7    
67.1    
67.6    
68.1    
68.6    
69.1    
69.6    
70.0    
70.5    
71.0    
71.5    
72.0    
72.5    
72.9    
73.4    
73.9    
74.4    
74.9    
75.4    
75.8    
76.3    
76.8    
77.3    
77.8    
78.3    
78.7    
79.2    
79.7    
80.2    
80.7    
81.2    
81.6    
82.1    
82.6    
83.1    
83.6    
84.1    
84.5    
85.0    
85.5    
86.0    
86.5    
87.0    
87.4    
87.9    
88.4    
88.9    
89.4    
89.9    
90.3    
90.8    
91.3    
91.8    
92.3    
92.8    
93.2    
93.7    
94.2    
94.7    
95.2    
95.7    
96.1    
96.6    
97.1    
97.6    
98.1    
98.6    
99.0    
99.5    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 18350, rend_intergenic: 14233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21018, rend_intergenic: 20120  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33770, rend_intergenic: 29103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42503, rend_intergenic: 34113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43601, rend_intergenic: 43297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45730, rend_intergenic: 44875  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59255, rend_intergenic: 55304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217334, rend_intergenic: 212893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222026, rend_intergenic: 218813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 213493 - 225419
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 214465 - 225419
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support