-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_27/scaffold_27_8319315-8521434

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_27-snap.1921-T1
Valid prediction for GlimmerHMM_glimmerT_57714-T1
Valid prediction for Augustus_model.g38234.t1
Valid prediction for snap_scaffold_27-snap.1907-T1
Valid prediction for snap_scaffold_27-snap.1942-T1
Valid prediction for snap_scaffold_27-snap.1908-T1
Valid prediction for snap_scaffold_27-snap.1956-T1
Valid prediction for GlimmerHMM_glimmerT_57730-T1
Valid prediction for snap_scaffold_27-snap.1919-T1
Valid prediction for snap_scaffold_27-snap.1932-T1
Valid prediction for snap_scaffold_27-snap.1909-T1
Valid prediction for GlimmerHMM_glimmerT_57715-T1
Valid prediction for Augustus_model.g38238.t1
Valid prediction for snap_scaffold_27-snap.1938-T1
Valid prediction for snap_scaffold_27-snap.1944-T1
Valid prediction for snap_scaffold_27-snap.1924-T1
Valid prediction for snap_scaffold_27-snap.1949-T1
Valid prediction for snap_scaffold_27-snap.1934-T1
Valid prediction for snap_scaffold_27-snap.1936-T1
Valid prediction for snap_scaffold_27-snap.1939-T1
Valid prediction for snap_scaffold_27-snap.1935-T1
Valid prediction for GlimmerHMM_glimmerT_57728-T1
Valid prediction for snap_scaffold_27-snap.1913-T1
Valid prediction for snap_scaffold_27-snap.1912-T1
Valid prediction for snap_scaffold_27-snap.1951-T1
Valid prediction for Augustus_model.g38236.t1
Valid prediction for snap_scaffold_27-snap.1948-T1
Valid prediction for GlimmerHMM_glimmerT_57726-T1
Valid prediction for GlimmerHMM_glimmerT_57721-T1
Valid prediction for GlimmerHMM_glimmerT_57724-T1
Valid prediction for snap_scaffold_27-snap.1926-T1
Valid prediction for GlimmerHMM_glimmerT_57725-T1
Valid prediction for snap_scaffold_27-snap.1930-T1
Valid prediction for snap_scaffold_27-snap.1946-T1
Valid prediction for Augustus_model.g38237.t1
Valid prediction for snap_scaffold_27-snap.1945-T1
Valid prediction for snap_scaffold_27-snap.1928-T1
Valid prediction for snap_scaffold_27-snap.1923-T1
Valid prediction for GlimmerHMM_glimmerT_57723-T1
Valid prediction for snap_scaffold_27-snap.1918-T1
Valid prediction for snap_scaffold_27-snap.1941-T1
Valid prediction for GlimmerHMM_glimmerT_57729-T1
Valid prediction for snap_scaffold_27-snap.1922-T1
Valid prediction for GlimmerHMM_glimmerT_57727-T1
Valid prediction for snap_scaffold_27-snap.1952-T1
Valid prediction for snap_scaffold_27-snap.1916-T1
Valid prediction for snap_scaffold_27-snap.1929-T1
Valid prediction for snap_scaffold_27-snap.1954-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_27-snap.1920-T1
Valid prediction for Augustus_model.g38230.t1
Valid prediction for snap_scaffold_27-snap.1937-T1
Valid prediction for GlimmerHMM_glimmerT_57718-T1
Valid prediction for snap_scaffold_27-snap.1910-T1
Valid prediction for GlimmerHMM_glimmerT_57716-T1
Valid prediction for snap_scaffold_27-snap.1927-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_27-snap.1953-T1
Valid prediction for GlimmerHMM_glimmerT_57719-T1
Valid prediction for Augustus_model.g38233.t1
Valid prediction for GlimmerHMM_glimmerT_57717-T1
Valid prediction for snap_scaffold_27-snap.1931-T1
Valid prediction for snap_scaffold_27-snap.1914-T1
Valid prediction for snap_scaffold_27-snap.1933-T1
Valid prediction for snap_scaffold_27-snap.1911-T1
Valid prediction for snap_scaffold_27-snap.1950-T1
Valid prediction for Augustus_model.g38235.t1
Valid prediction for Augustus_model.g38232.t1
Valid prediction for snap_scaffold_27-snap.1915-T1
Valid prediction for snap_scaffold_27-snap.1947-T1
Valid prediction for Augustus_model.g38231.t1
Valid prediction for snap_scaffold_27-snap.1955-T1
Valid prediction for GlimmerHMM_glimmerT_57722-T1
Valid prediction for GlimmerHMM_glimmerT_57720-T1
Valid prediction for snap_scaffold_27-snap.1943-T1
Valid prediction for snap_scaffold_27-snap.1925-T1
Valid prediction for snap_scaffold_27-snap.1940-T1
Valid prediction for snap_scaffold_27-snap.1917-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 33379, rend_intergenic: 27195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35178, rend_intergenic: 33923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43473, rend_intergenic: 40596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45605, rend_intergenic: 44454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52899, rend_intergenic: 47787  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72458, rend_intergenic: 60758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79533, rend_intergenic: 76605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90193, rend_intergenic: 81825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96350, rend_intergenic: 93012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121735, rend_intergenic: 114680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128600, rend_intergenic: 122913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129990, rend_intergenic: 128606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144978, rend_intergenic: 140771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163001, rend_intergenic: 160035  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169844, rend_intergenic: 163979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171043, rend_intergenic: 170130  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176548, rend_intergenic: 171496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198274, rend_intergenic: 195502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 202120
-exon list size: 242


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.5    
2.9    
3.3    
3.7    
4.1    
4.5    
4.9    
5.3    
5.7    
6.1    
6.6    
7.0    
7.4    
7.8    
8.2    
8.6    
9.0    
9.4    
9.8    
10.2    
10.7    
11.1    
11.5    
11.9    
12.3    
12.7    
13.1    
13.5    
13.9    
14.3    
14.8    
15.2    
15.6    
16.0    
16.4    
16.8    
17.2    
17.6    
18.0    
18.4    
18.9    
19.3    
19.7    
20.1    
20.5    
20.9    
21.3    
21.7    
22.1    
22.5    
23.0    
23.4    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.6    
27.0    
27.5    
27.9    
28.3    
28.7    
29.1    
29.5    
29.9    
30.3    
30.7    
31.1    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.7    
36.1    
36.5    
36.9    
37.3    
37.7    
38.1    
38.5    
38.9    
39.3    
39.8    
40.2    
40.6    
41.0    
41.4    
41.8    
42.2    
42.6    
43.0    
43.4    
43.9    
44.3    
44.7    
45.1    
45.5    
45.9    
46.3    
46.7    
47.1    
47.5    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.5    
52.9    
53.3    
53.7    
54.1    
54.5    
54.9    
55.3    
55.7    
56.1    
56.6    
57.0    
57.4    
57.8    
58.2    
58.6    
59.0    
59.4    
59.8    
60.2    
60.7    
61.1    
61.5    
61.9    
62.3    
62.7    
63.1    
63.5    
63.9    
64.3    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.9    
69.3    
69.7    
70.1    
70.5    
70.9    
71.3    
71.7    
72.1    
72.5    
73.0    
73.4    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.6    
77.0    
77.5    
77.9    
78.3    
78.7    
79.1    
79.5    
79.9    
80.3    
80.7    
81.1    
81.6    
82.0    
82.4    
82.8    
83.2    
83.6    
84.0    
84.4    
84.8    
85.2    
85.7    
86.1    
86.5    
86.9    
87.3    
87.7    
88.1    
88.5    
88.9    
89.3    
89.8    
90.2    
90.6    
91.0    
91.4    
91.8    
92.2    
92.6    
93.0    
93.4    
93.9    
94.3    
94.7    
95.1    
95.5    
95.9    
96.3    
96.7    
97.1    
97.5    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 33379, rend_intergenic: 27195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35178, rend_intergenic: 33923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43473, rend_intergenic: 40596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45605, rend_intergenic: 44454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52899, rend_intergenic: 47787  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72458, rend_intergenic: 60758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79533, rend_intergenic: 76605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90193, rend_intergenic: 81825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96350, rend_intergenic: 93012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121735, rend_intergenic: 114680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128600, rend_intergenic: 122913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129990, rend_intergenic: 128606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144978, rend_intergenic: 140771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163001, rend_intergenic: 160035  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169844, rend_intergenic: 163979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171043, rend_intergenic: 170130  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176548, rend_intergenic: 171496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198274, rend_intergenic: 195502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12792
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11936
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support