-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_27/scaffold_27_8047627-8324122

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_57694-T1
Valid prediction for snap_scaffold_27-snap.1885-T1
Valid prediction for snap_scaffold_27-snap.1902-T1
Valid prediction for snap_scaffold_27-snap.1904-T1
Valid prediction for snap_scaffold_27-snap.1896-T1
Valid prediction for GlimmerHMM_glimmerT_57707-T1
Valid prediction for snap_scaffold_27-snap.1880-T1
Valid prediction for GlimmerHMM_glimmerT_57701-T1
Valid prediction for snap_scaffold_27-snap.1891-T1
Valid prediction for snap_scaffold_27-snap.1889-T1
Valid prediction for snap_scaffold_27-snap.1884-T1
Valid prediction for snap_scaffold_27-snap.1897-T1
Valid prediction for GlimmerHMM_glimmerT_57706-T1
Valid prediction for GlimmerHMM_glimmerT_57709-T1
Valid prediction for Augustus_model.g38227.t1
Valid prediction for GlimmerHMM_glimmerT_57696-T1
Valid prediction for snap_scaffold_27-snap.1882-T1
Valid prediction for GlimmerHMM_glimmerT_57704-T1
Valid prediction for GlimmerHMM_glimmerT_57703-T1
Valid prediction for GlimmerHMM_glimmerT_57710-T1
Valid prediction for Augustus_model.g38225.t1
Valid prediction for GlimmerHMM_glimmerT_57713-T1
Valid prediction for GlimmerHMM_glimmerT_57697-T1
Valid prediction for GlimmerHMM_glimmerT_57702-T1
Valid prediction for snap_scaffold_27-snap.1874-T1
Valid prediction for snap_scaffold_27-snap.1886-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_27-snap.1895-T1
Valid prediction for snap_scaffold_27-snap.1875-T1
Valid prediction for snap_scaffold_27-snap.1872-T1
Valid prediction for snap_scaffold_27-snap.1876-T1
Valid prediction for snap_scaffold_27-snap.1893-T1
Valid prediction for snap_scaffold_27-snap.1899-T1
Valid prediction for GlimmerHMM_glimmerT_57699-T1
Valid prediction for snap_scaffold_27-snap.1883-T1
Valid prediction for GlimmerHMM_glimmerT_57711-T1
Valid prediction for snap_scaffold_27-snap.1888-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_27-snap.1892-T1
Valid prediction for snap_scaffold_27-snap.1906-T1
Valid prediction for Augustus_model.g38223.t1
Valid prediction for GlimmerHMM_glimmerT_57698-T1
Valid prediction for GlimmerHMM_glimmerT_57700-T1
Valid prediction for snap_scaffold_27-snap.1878-T1
Valid prediction for snap_scaffold_27-snap.1894-T1
Valid prediction for snap_scaffold_27-snap.1871-T1
Valid prediction for snap_scaffold_27-snap.1905-T1
Valid prediction for GlimmerHMM_glimmerT_57705-T1
Valid prediction for snap_scaffold_27-snap.1873-T1
Valid prediction for Augustus_model.g38228.t1
Valid prediction for snap_scaffold_27-snap.1900-T1
Valid prediction for GlimmerHMM_glimmerT_57695-T1
Valid prediction for Augustus_model.g38226.t1
Valid prediction for snap_scaffold_27-snap.1881-T1
Valid prediction for GlimmerHMM_glimmerT_57712-T1
Valid prediction for snap_scaffold_27-snap.1901-T1
Valid prediction for Augustus_model.g38229.t1
Valid prediction for snap_scaffold_27-snap.1898-T1
Valid prediction for snap_scaffold_27-snap.1890-T1
Valid prediction for snap_scaffold_27-snap.1877-T1
Valid prediction for GlimmerHMM_glimmerT_57692-T1
Valid prediction for snap_scaffold_27-snap.1879-T1
Valid prediction for GlimmerHMM_glimmerT_57693-T1
Valid prediction for Augustus_model.g38224.t1
Valid prediction for GlimmerHMM_glimmerT_57708-T1
Valid prediction for snap_scaffold_27-snap.1903-T1
Valid prediction for snap_scaffold_27-snap.1887-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15941, rend_intergenic: 10972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17701, rend_intergenic: 16180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68915, rend_intergenic: 65630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75624, rend_intergenic: 73849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86389, rend_intergenic: 81455  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154731, rend_intergenic: 149388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187856, rend_intergenic: 185991  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226921, rend_intergenic: 224079  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 276496
-exon list size: 199


building trellis

0.5    
1.0    
1.5    
2.0    
2.5    
3.0    
3.5    
4.0    
4.5    
5.0    
5.5    
6.0    
6.5    
7.0    
7.5    
8.0    
8.5    
9.0    
9.5    
10.0    
10.4    
10.9    
11.4    
11.9    
12.4    
12.9    
13.4    
13.9    
14.4    
14.9    
15.4    
15.9    
16.4    
16.9    
17.4    
17.9    
18.4    
18.9    
19.4    
19.9    
20.4    
20.9    
21.4    
21.9    
22.4    
22.9    
23.4    
23.9    
24.4    
24.9    
25.4    
25.9    
26.4    
26.9    
27.4    
27.9    
28.4    
28.9    
29.4    
29.9    
30.3    
30.8    
31.3    
31.8    
32.3    
32.8    
33.3    
33.8    
34.3    
34.8    
35.3    
35.8    
36.3    
36.8    
37.3    
37.8    
38.3    
38.8    
39.3    
39.8    
40.3    
40.8    
41.3    
41.8    
42.3    
42.8    
43.3    
43.8    
44.3    
44.8    
45.3    
45.8    
46.3    
46.8    
47.3    
47.8    
48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.2    
52.7    
53.2    
53.7    
54.2    
54.7    
55.2    
55.7    
56.2    
56.7    
57.2    
57.7    
58.2    
58.7    
59.2    
59.7    
60.2    
60.7    
61.2    
61.7    
62.2    
62.7    
63.2    
63.7    
64.2    
64.7    
65.2    
65.7    
66.2    
66.7    
67.2    
67.7    
68.2    
68.7    
69.2    
69.7    
70.1    
70.6    
71.1    
71.6    
72.1    
72.6    
73.1    
73.6    
74.1    
74.6    
75.1    
75.6    
76.1    
76.6    
77.1    
77.6    
78.1    
78.6    
79.1    
79.6    
80.1    
80.6    
81.1    
81.6    
82.1    
82.6    
83.1    
83.6    
84.1    
84.6    
85.1    
85.6    
86.1    
86.6    
87.1    
87.6    
88.1    
88.6    
89.1    
89.6    
90.0    
90.5    
91.0    
91.5    
92.0    
92.5    
93.0    
93.5    
94.0    
94.5    
95.0    
95.5    
96.0    
96.5    
97.0    
97.5    
98.0    
98.5    
99.0    
99.5    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 15941, rend_intergenic: 10972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17701, rend_intergenic: 16180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68915, rend_intergenic: 65630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75624, rend_intergenic: 73849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86389, rend_intergenic: 81455  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154731, rend_intergenic: 149388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187856, rend_intergenic: 185991  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226921, rend_intergenic: 224079  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 259410 - 276496
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 263115 - 276496
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support