-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_27/scaffold_27_7796697-8050073

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_57676-T1
Valid prediction for snap_scaffold_27-snap.1832-T1
Valid prediction for Augustus_model.g38220.t1
Valid prediction for snap_scaffold_27-snap.1865-T1
Valid prediction for Augustus_model.g38215.t1
Valid prediction for snap_scaffold_27-snap.1860-T1
Valid prediction for snap_scaffold_27-snap.1870-T1
Valid prediction for snap_scaffold_27-snap.1862-T1
Valid prediction for Augustus_model.g38216.t1
Valid prediction for snap_scaffold_27-snap.1853-T1
Valid prediction for Augustus_model.g38214.t1
Valid prediction for snap_scaffold_27-snap.1837-T1
Valid prediction for GlimmerHMM_glimmerT_57670-T1
Valid prediction for snap_scaffold_27-snap.1868-T1
Valid prediction for snap_scaffold_27-snap.1844-T1
Valid prediction for GlimmerHMM_glimmerT_57689-T1
Valid prediction for snap_scaffold_27-snap.1835-T1
Valid prediction for GlimmerHMM_glimmerT_57686-T1
Valid prediction for Augustus_model.g38219.t1
Valid prediction for Augustus_model.g38221.t1
Valid prediction for Augustus_model.g38217.t1
Valid prediction for GlimmerHMM_glimmerT_57691-T1
Valid prediction for snap_scaffold_27-snap.1863-T1
Valid prediction for snap_scaffold_27-snap.1856-T1
Valid prediction for Augustus_model.g38222.t1
Valid prediction for GlimmerHMM_glimmerT_57673-T1
Valid prediction for snap_scaffold_27-snap.1857-T1
Valid prediction for GlimmerHMM_glimmerT_57674-T1
Valid prediction for snap_scaffold_27-snap.1855-T1
Valid prediction for snap_scaffold_27-snap.1848-T1
Valid prediction for snap_scaffold_27-snap.1852-T1
Valid prediction for snap_scaffold_27-snap.1845-T1
Valid prediction for GlimmerHMM_glimmerT_57681-T1
Valid prediction for GlimmerHMM_glimmerT_57675-T1
Valid prediction for GlimmerHMM_glimmerT_57688-T1
Valid prediction for snap_scaffold_27-snap.1847-T1
Valid prediction for snap_scaffold_27-snap.1841-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_27-snap.1864-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_57679-T1
Valid prediction for snap_scaffold_27-snap.1842-T1
Valid prediction for snap_scaffold_27-snap.1866-T1
Valid prediction for snap_scaffold_27-snap.1840-T1
Valid prediction for snap_scaffold_27-snap.1846-T1
Valid prediction for GlimmerHMM_glimmerT_57687-T1
Valid prediction for snap_scaffold_27-snap.1854-T1
Valid prediction for snap_scaffold_27-snap.1843-T1
Valid prediction for GlimmerHMM_glimmerT_57682-T1
Valid prediction for GlimmerHMM_glimmerT_57680-T1
Valid prediction for GlimmerHMM_glimmerT_57690-T1
Valid prediction for GlimmerHMM_glimmerT_57677-T1
Valid prediction for snap_scaffold_27-snap.1831-T1
Valid prediction for snap_scaffold_27-snap.1836-T1
Valid prediction for snap_scaffold_27-snap.1867-T1
Valid prediction for GlimmerHMM_glimmerT_57678-T1
Valid prediction for snap_scaffold_27-snap.1839-T1
Valid prediction for GlimmerHMM_glimmerT_57683-T1
Valid prediction for GlimmerHMM_glimmerT_57684-T1
Valid prediction for snap_scaffold_27-snap.1869-T1
Valid prediction for snap_scaffold_27-snap.1851-T1
Valid prediction for snap_scaffold_27-snap.1859-T1
Valid prediction for Augustus_model.g38218.t1
Valid prediction for snap_scaffold_27-snap.1849-T1
Valid prediction for snap_scaffold_27-snap.1861-T1
Valid prediction for snap_scaffold_27-snap.1838-T1
Valid prediction for snap_scaffold_27-snap.1833-T1
Valid prediction for snap_scaffold_27-snap.1850-T1
Valid prediction for GlimmerHMM_glimmerT_57672-T1
Valid prediction for snap_scaffold_27-snap.1834-T1
Valid prediction for GlimmerHMM_glimmerT_57685-T1
Valid prediction for snap_scaffold_27-snap.1858-T1
Valid prediction for GlimmerHMM_glimmerT_57671-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5588, rend_intergenic: 4454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11738, rend_intergenic: 5887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13391, rend_intergenic: 11853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20059, rend_intergenic: 18289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28121, rend_intergenic: 20567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35979, rend_intergenic: 30074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45502, rend_intergenic: 36005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62149, rend_intergenic: 61153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73646, rend_intergenic: 62282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86930, rend_intergenic: 74286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116108, rend_intergenic: 110799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124427, rend_intergenic: 120360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151793, rend_intergenic: 150482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198131, rend_intergenic: 195283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228968, rend_intergenic: 225765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 253377
-exon list size: 239


building trellis

0.4    
0.8    
1.2    
1.7    
2.1    
2.5    
2.9    
3.3    
3.7    
4.1    
4.6    
5.0    
5.4    
5.8    
6.2    
6.6    
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7.5    
7.9    
8.3    
8.7    
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11.6    
12.0    
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16.6    
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17.8    
18.3    
18.7    
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21.6    
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25.3    
25.7    
26.1    
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27.0    
27.4    
27.8    
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28.6    
29.0    
29.5    
29.9    
30.3    
30.7    
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31.5    
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32.8    
33.2    
33.6    
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34.4    
34.9    
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43.6    
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44.4    
44.8    
45.2    
45.6    
46.1    
46.5    
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47.3    
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48.1    
48.5    
49.0    
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49.8    
50.2    
50.6    
51.0    
51.5    
51.9    
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52.7    
53.1    
53.5    
53.9    
54.4    
54.8    
55.2    
55.6    
56.0    
56.4    
56.8    
57.3    
57.7    
58.1    
58.5    
58.9    
59.3    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.7    
63.1    
63.5    
63.9    
64.3    
64.7    
65.1    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.5    
68.9    
69.3    
69.7    
70.1    
70.5    
71.0    
71.4    
71.8    
72.2    
72.6    
73.0    
73.4    
73.9    
74.3    
74.7    
75.1    
75.5    
75.9    
76.3    
76.8    
77.2    
77.6    
78.0    
78.4    
78.8    
79.3    
79.7    
80.1    
80.5    
80.9    
81.3    
81.7    
82.2    
82.6    
83.0    
83.4    
83.8    
84.2    
84.6    
85.1    
85.5    
85.9    
86.3    
86.7    
87.1    
87.6    
88.0    
88.4    
88.8    
89.2    
89.6    
90.0    
90.5    
90.9    
91.3    
91.7    
92.1    
92.5    
92.9    
93.4    
93.8    
94.2    
94.6    
95.0    
95.4    
95.9    
96.3    
96.7    
97.1    
97.5    
97.9    
98.3    
98.8    
99.2    
99.6    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 5588, rend_intergenic: 4454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11738, rend_intergenic: 5887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13391, rend_intergenic: 11853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20059, rend_intergenic: 18289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28121, rend_intergenic: 20567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35979, rend_intergenic: 30074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45502, rend_intergenic: 36005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62149, rend_intergenic: 61153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73646, rend_intergenic: 62282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86930, rend_intergenic: 74286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116108, rend_intergenic: 110799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124427, rend_intergenic: 120360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151793, rend_intergenic: 150482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198131, rend_intergenic: 195283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228968, rend_intergenic: 225765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support