-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_27/scaffold_27_5123675-5236805

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_57289-T1
Valid prediction for GlimmerHMM_glimmerT_57298-T1
Valid prediction for snap_scaffold_27-snap.1205-T1
Valid prediction for snap_scaffold_27-snap.1207-T1
Valid prediction for snap_scaffold_27-snap.1208-T1
Valid prediction for GlimmerHMM_glimmerT_57291-T1
Valid prediction for snap_scaffold_27-snap.1204-T1
Valid prediction for Augustus_model.g37976.t1
Valid prediction for snap_scaffold_27-snap.1213-T1
Valid prediction for snap_scaffold_27-snap.1195-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_27-snap.1215-T1
Valid prediction for GlimmerHMM_glimmerT_57297-T1
Valid prediction for snap_scaffold_27-snap.1200-T1
Valid prediction for GlimmerHMM_glimmerT_57294-T1
Valid prediction for snap_scaffold_27-snap.1211-T1
Valid prediction for snap_scaffold_27-snap.1197-T1
Valid prediction for snap_scaffold_27-snap.1212-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_57299-T1
Couldn't classify 106608, 106680
Sorry, prediction pasa_asmbl_36994.p1 fails validation.
(ATG)	 TC	102071-102111	GT	TGG
(GAC)	 AG	104670-104832	GT	AGG
(GTG)	 AG	104947-105145	GT	GTG
(ACC)	 AG	105248-105461	GT	AGG
(GTC)	 AG	106608-106680	GG	AGG
-recovered pasa_asmbl_36994.p1, initial, 102071, 102111
-recovered pasa_asmbl_36994.p1, internal, 104670, 104832
-recovered pasa_asmbl_36994.p1, internal, 104947, 105145
-recovered pasa_asmbl_36994.p1, internal, 105248, 105461
Couldn't classify 107444, 107490
Sorry, prediction pasa_asmbl_36993.p1 fails validation.
(GAC)	 GG	107444-107490	GT	AGG
(GAA)	 AG	107708-107881	GT	AGG
(GGG)	 AG	109032-109140	GA	GAG
-recovered pasa_asmbl_36993.p1, terminal, 109032, 109140
-recovered pasa_asmbl_36993.p1, internal, 107708, 107881
Valid prediction for GlimmerHMM_glimmerT_57290-T1
Valid prediction for snap_scaffold_27-snap.1206-T1
Valid prediction for snap_scaffold_27-snap.1209-T1
Valid prediction for snap_scaffold_27-snap.1210-T1
Valid prediction for GlimmerHMM_glimmerT_57293-T1
Valid prediction for GlimmerHMM_glimmerT_57300-T1
Couldn't classify 21328, 21429
Sorry, prediction pasa_asmbl_36999.p2 fails validation.
(GAT)	 AG	21328-21429	GT	CGG
(GGC)	 AG	23911-23998	GT	AGG
(GGT)	 AG	24932-25051	GT	GGG
(AGG)	 AG	25903-25949	TG	GAT
-recovered pasa_asmbl_36999.p2, terminal, 25903, 25949
-recovered pasa_asmbl_36999.p2, internal, 21328, 21429
-recovered pasa_asmbl_36999.p2, internal, 23911, 23998
-recovered pasa_asmbl_36999.p2, internal, 24932, 25051
Valid prediction for snap_scaffold_27-snap.1217-T1
Valid prediction for snap_scaffold_27-snap.1203-T1
Valid prediction for GlimmerHMM_glimmerT_57286-T1
Valid prediction for Augustus_model.g37978.t1
Valid prediction for snap_scaffold_27-snap.1202-T1
Valid prediction for snap_scaffold_27-snap.1196-T1
Valid prediction for snap_scaffold_27-snap.1194-T1
Valid prediction for GlimmerHMM_glimmerT_57296-T1
Valid prediction for GlimmerHMM_glimmerT_57295-T1
Valid prediction for GlimmerHMM_glimmerT_57301-T1
Valid prediction for snap_scaffold_27-snap.1216-T1
Valid prediction for GlimmerHMM_glimmerT_57287-T1
Valid prediction for CodingQuarry_transcript_41893-T1
Valid prediction for snap_scaffold_27-snap.1198-T1
Valid prediction for snap_scaffold_27-snap.1201-T1
Valid prediction for GlimmerHMM_glimmerT_57302-T1
Valid prediction for Augustus_model.g37977.t1
Valid prediction for GlimmerHMM_glimmerT_57292-T1
Valid prediction for GlimmerHMM_glimmerT_57288-T1
Valid prediction for snap_scaffold_27-snap.1214-T1
Couldn't classify 41152, 41274
Sorry, prediction pasa_asmbl_36996.p1 fails validation.
(CTG)	 GA	41152-41274	GT	AGG
(ATC)	 AG	42264-42440	AA	AGA
-recovered pasa_asmbl_36996.p1, terminal, 42264, 42440
Valid prediction for snap_scaffold_27-snap.1199-T1
Valid prediction for Augustus_model.g37975.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8724, rend_intergenic: 5920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21140, rend_intergenic: 13681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28336, rend_intergenic: 21788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37001, rend_intergenic: 28840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49167, rend_intergenic: 37191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58599, rend_intergenic: 49620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70949, rend_intergenic: 68283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82900, rend_intergenic: 75133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98063, rend_intergenic: 85852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103450, rend_intergenic: 99078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104827, rend_intergenic: 103489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108410, rend_intergenic: 105409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 113131
-exon list size: 192


building trellis

0.5    
1.0    
1.5    
2.1    
2.6    
3.1    
3.6    
4.1    
4.6    
5.2    
5.7    
6.2    
6.7    
7.2    
7.7    
8.2    
8.8    
9.3    
9.8    
10.3    
10.8    
11.3    
11.9    
12.4    
12.9    
13.4    
13.9    
14.4    
14.9    
15.5    
16.0    
16.5    
17.0    
17.5    
18.0    
18.6    
19.1    
19.6    
20.1    
20.6    
21.1    
21.6    
22.2    
22.7    
23.2    
23.7    
24.2    
24.7    
25.3    
25.8    
26.3    
26.8    
27.3    
27.8    
28.4    
28.9    
29.4    
29.9    
30.4    
30.9    
31.4    
32.0    
32.5    
33.0    
33.5    
34.0    
34.5    
35.1    
35.6    
36.1    
36.6    
37.1    
37.6    
38.1    
38.7    
39.2    
39.7    
40.2    
40.7    
41.2    
41.8    
42.3    
42.8    
43.3    
43.8    
44.3    
44.8    
45.4    
45.9    
46.4    
46.9    
47.4    
47.9    
48.5    
49.0    
49.5    
50.0    
50.5    
51.0    
51.5    
52.1    
52.6    
53.1    
53.6    
54.1    
54.6    
55.2    
55.7    
56.2    
56.7    
57.2    
57.7    
58.2    
58.8    
59.3    
59.8    
60.3    
60.8    
61.3    
61.9    
62.4    
62.9    
63.4    
63.9    
64.4    
64.9    
65.5    
66.0    
66.5    
67.0    
67.5    
68.0    
68.6    
69.1    
69.6    
70.1    
70.6    
71.1    
71.6    
72.2    
72.7    
73.2    
73.7    
74.2    
74.7    
75.3    
75.8    
76.3    
76.8    
77.3    
77.8    
78.4    
78.9    
79.4    
79.9    
80.4    
80.9    
81.4    
82.0    
82.5    
83.0    
83.5    
84.0    
84.5    
85.1    
85.6    
86.1    
86.6    
87.1    
87.6    
88.1    
88.7    
89.2    
89.7    
90.2    
90.7    
91.2    
91.8    
92.3    
92.8    
93.3    
93.8    
94.3    
94.8    
95.4    
95.9    
96.4    
96.9    
97.4    
97.9    
98.5    
99.0    
99.5    
-found 13 predictions from path traversal
Error with prediction: snap lend_intergenic: 8724, rend_intergenic: 5920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21140, rend_intergenic: 13681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28336, rend_intergenic: 21788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37001, rend_intergenic: 28840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49167, rend_intergenic: 37191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58599, rend_intergenic: 49620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70949, rend_intergenic: 68283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82900, rend_intergenic: 75133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98063, rend_intergenic: 85852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103450, rend_intergenic: 99078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104827, rend_intergenic: 103489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108410, rend_intergenic: 105409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support