-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_27/scaffold_27_3462673-3579989

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_27-snap.823-T1
Valid prediction for snap_scaffold_27-snap.833-T1
Valid prediction for snap_scaffold_27-snap.826-T1
Valid prediction for snap_scaffold_27-snap.838-T1
Valid prediction for snap_scaffold_27-snap.818-T1
Couldn't classify 100135, 100177
Sorry, prediction pasa_asmbl_36209.p1 fails validation.
(ACC)	 TC	100135-100177	GT	AGG
(GCT)	 AG	101759-101785	GT	TGG
(GAC)	 AG	104457-104573	GT	AGG
(CAA)	 AG	105329-105607	GT	AGG
(GTT)	 AG	106588-106732	GT	GAG
(GGA)	 AG	107932-108062	GT	AGG
(TGC)	 AG	109403-109560	GT	AGG
(ATG)	 AG	110687-110839	CT	GAC
-recovered pasa_asmbl_36209.p1, terminal, 110687, 110839
-recovered pasa_asmbl_36209.p1, internal, 101759, 101785
-recovered pasa_asmbl_36209.p1, internal, 104457, 104573
-recovered pasa_asmbl_36209.p1, internal, 105329, 105607
-recovered pasa_asmbl_36209.p1, internal, 106588, 106732
-recovered pasa_asmbl_36209.p1, internal, 107932, 108062
-recovered pasa_asmbl_36209.p1, internal, 109403, 109560
Couldn't classify 81040, 81834
Sorry, prediction pasa_asmbl_36207.p1 fails validation.
(ATG)	 AC	81040-81834	AA	ACA
Valid prediction for GlimmerHMM_glimmerT_57052-T1
Valid prediction for Augustus_model.g37808.t1
Valid prediction for snap_scaffold_27-snap.835-T1
Valid prediction for Augustus_model.g37805.t1
Valid prediction for snap_scaffold_27-snap.832-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_57054-T1
Valid prediction for CodingQuarry_transcript_41854-T1
Valid prediction for GlimmerHMM_glimmerT_57056-T1
Valid prediction for snap_scaffold_27-snap.831-T1
Valid prediction for Augustus_model.g37809.t1
Valid prediction for Augustus_model.g37807.t1
Valid prediction for Augustus_model.g37798.t1
Valid prediction for HiQ_model.g37802.t1
Valid prediction for pasa_asmbl_36204.p1
Valid prediction for GlimmerHMM_glimmerT_57057-T1
Valid prediction for snap_scaffold_27-snap.824-T1
Valid prediction for snap_scaffold_27-snap.839-T1
Valid prediction for snap_scaffold_27-snap.841-T1
Valid prediction for GlimmerHMM_glimmerT_57049-T1
Valid prediction for snap_scaffold_27-snap.820-T1
Valid prediction for snap_scaffold_27-snap.836-T1
Valid prediction for GlimmerHMM_glimmerT_57058-T1
Valid prediction for Augustus_model.g37803.t1
Valid prediction for GlimmerHMM_glimmerT_57036-T1
Valid prediction for snap_scaffold_27-snap.817-T1
Valid prediction for snap_scaffold_27-snap.837-T1
Valid prediction for GlimmerHMM_glimmerT_57038-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_57055-T1
Valid prediction for snap_scaffold_27-snap.815-T1
Valid prediction for GlimmerHMM_glimmerT_57045-T1
Valid prediction for GlimmerHMM_glimmerT_57041-T1
Valid prediction for snap_scaffold_27-snap.825-T1
Valid prediction for snap_scaffold_27-snap.822-T1
Valid prediction for GlimmerHMM_glimmerT_57048-T1
Valid prediction for snap_scaffold_27-snap.816-T1
Valid prediction for snap_scaffold_27-snap.827-T1
Valid prediction for GlimmerHMM_glimmerT_57047-T1
Valid prediction for Augustus_model.g37794.t1
Valid prediction for Augustus_model.g37804.t1
Valid prediction for GlimmerHMM_glimmerT_57040-T1
Valid prediction for snap_scaffold_27-snap.840-T1
Valid prediction for Augustus_model.g37799.t1
Valid prediction for GlimmerHMM_glimmerT_57050-T1
Valid prediction for Augustus_model.g37801.t1
Valid prediction for snap_scaffold_27-snap.829-T1
Valid prediction for snap_scaffold_27-snap.819-T1
Valid prediction for GlimmerHMM_glimmerT_57039-T1
Valid prediction for snap_scaffold_27-snap.814-T1
Valid prediction for GlimmerHMM_glimmerT_57046-T1
Valid prediction for Augustus_model.g37806.t1
Valid prediction for GlimmerHMM_glimmerT_57042-T1
Valid prediction for Augustus_model.g37797.t1
Valid prediction for GlimmerHMM_glimmerT_57037-T1
Valid prediction for GlimmerHMM_glimmerT_57043-T1
Valid prediction for GlimmerHMM_glimmerT_57044-T1
Valid prediction for snap_scaffold_27-snap.842-T1
Valid prediction for Augustus_model.g37796.t1
Valid prediction for snap_scaffold_27-snap.830-T1
Valid prediction for Augustus_model.g37800.t1
Valid prediction for GlimmerHMM_glimmerT_57051-T1
Valid prediction for snap_scaffold_27-snap.821-T1
Valid prediction for Augustus_model.g37795.t1
Valid prediction for snap_scaffold_27-snap.834-T1
Valid prediction for GlimmerHMM_glimmerT_57053-T1
Valid prediction for snap_scaffold_27-snap.828-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 27132, rend_intergenic: 26007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36181, rend_intergenic: 35359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47657, rend_intergenic: 44355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72230, rend_intergenic: 69571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101299, rend_intergenic: 96028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112398, rend_intergenic: 105501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 117317
-exon list size: 213


building trellis

0.5    
0.9    
1.4    
1.9    
2.3    
2.8    
3.3    
3.7    
4.2    
4.7    
5.1    
5.6    
6.0    
6.5    
7.0    
7.4    
7.9    
8.4    
8.8    
9.3    
9.8    
10.2    
10.7    
11.2    
11.6    
12.1    
12.6    
13.0    
13.5    
14.0    
14.4    
14.9    
15.3    
15.8    
16.3    
16.7    
17.2    
17.7    
18.1    
18.6    
19.1    
19.5    
20.0    
20.5    
20.9    
21.4    
21.9    
22.3    
22.8    
23.3    
23.7    
24.2    
24.7    
25.1    
25.6    
26.0    
26.5    
27.0    
27.4    
27.9    
28.4    
28.8    
29.3    
29.8    
30.2    
30.7    
31.2    
31.6    
32.1    
32.6    
33.0    
33.5    
34.0    
34.4    
34.9    
35.3    
35.8    
36.3    
36.7    
37.2    
37.7    
38.1    
38.6    
39.1    
39.5    
40.0    
40.5    
40.9    
41.4    
41.9    
42.3    
42.8    
43.3    
43.7    
44.2    
44.7    
45.1    
45.6    
46.0    
46.5    
47.0    
47.4    
47.9    
48.4    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.6    
52.1    
52.6    
53.0    
53.5    
54.0    
54.4    
54.9    
55.3    
55.8    
56.3    
56.7    
57.2    
57.7    
58.1    
58.6    
59.1    
59.5    
60.0    
60.5    
60.9    
61.4    
61.9    
62.3    
62.8    
63.3    
63.7    
64.2    
64.7    
65.1    
65.6    
66.0    
66.5    
67.0    
67.4    
67.9    
68.4    
68.8    
69.3    
69.8    
70.2    
70.7    
71.2    
71.6    
72.1    
72.6    
73.0    
73.5    
74.0    
74.4    
74.9    
75.3    
75.8    
76.3    
76.7    
77.2    
77.7    
78.1    
78.6    
79.1    
79.5    
80.0    
80.5    
80.9    
81.4    
81.9    
82.3    
82.8    
83.3    
83.7    
84.2    
84.7    
85.1    
85.6    
86.0    
86.5    
87.0    
87.4    
87.9    
88.4    
88.8    
89.3    
89.8    
90.2    
90.7    
91.2    
91.6    
92.1    
92.6    
93.0    
93.5    
94.0    
94.4    
94.9    
95.3    
95.8    
96.3    
96.7    
97.2    
97.7    
98.1    
98.6    
99.1    
99.5    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 27132, rend_intergenic: 26007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36181, rend_intergenic: 35359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47657, rend_intergenic: 44355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72230, rend_intergenic: 69571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101299, rend_intergenic: 96028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112398, rend_intergenic: 105501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support