-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_27/scaffold_27_3174225-3307693

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_27-snap.772-T1
Valid prediction for snap_scaffold_27-snap.757-T1
Valid prediction for GlimmerHMM_glimmerT_56974-T1
Valid prediction for GlimmerHMM_glimmerT_56982-T1
Valid prediction for snap_scaffold_27-snap.745-T1
Valid prediction for snap_scaffold_27-snap.769-T1
Valid prediction for GlimmerHMM_glimmerT_56975-T1
Valid prediction for GlimmerHMM_glimmerT_56991-T1
Valid prediction for GlimmerHMM_glimmerT_56989-T1
Valid prediction for GlimmerHMM_glimmerT_56997-T1
Valid prediction for Augustus_model.g37761.t1
Valid prediction for GlimmerHMM_glimmerT_56994-T1
Valid prediction for snap_scaffold_27-snap.761-T1
Valid prediction for Augustus_model.g37765.t1
Valid prediction for GlimmerHMM_glimmerT_56987-T1
Valid prediction for Augustus_model.g37763.t1
Valid prediction for snap_scaffold_27-snap.759-T1
Valid prediction for GlimmerHMM_glimmerT_56981-T1
Valid prediction for Augustus_model.g37766.t1
Valid prediction for snap_scaffold_27-snap.775-T1
Valid prediction for snap_scaffold_27-snap.776-T1
Valid prediction for GlimmerHMM_glimmerT_56988-T1
Valid prediction for GlimmerHMM_glimmerT_56985-T1
Valid prediction for GlimmerHMM_glimmerT_56979-T1
Valid prediction for Augustus_model.g37760.t1
Valid prediction for snap_scaffold_27-snap.774-T1
Valid prediction for GlimmerHMM_glimmerT_56984-T1
Valid prediction for snap_scaffold_27-snap.764-T1
Valid prediction for GlimmerHMM_glimmerT_56992-T1
Valid prediction for snap_scaffold_27-snap.752-T1
Valid prediction for Augustus_model.g37769.t1
Valid prediction for snap_scaffold_27-snap.751-T1
Valid prediction for snap_scaffold_27-snap.768-T1
Valid prediction for snap_scaffold_27-snap.756-T1
Valid prediction for snap_scaffold_27-snap.762-T1
Valid prediction for GlimmerHMM_glimmerT_56980-T1
Valid prediction for GlimmerHMM_glimmerT_56976-T1
Valid prediction for snap_scaffold_27-snap.755-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_27-snap.760-T1
Couldn't classify 7154, 9541
Sorry, prediction pasa_asmbl_36907.p1 fails validation.
(GGG)	 TG	7154-9541	TT	AGT
Valid prediction for Augustus_model.g37770.t1
Valid prediction for snap_scaffold_27-snap.750-T1
Valid prediction for snap_scaffold_27-snap.770-T1
Valid prediction for GlimmerHMM_glimmerT_57000-T1
Valid prediction for snap_scaffold_27-snap.747-T1
Valid prediction for Augustus_model.g37772.t1
Valid prediction for GlimmerHMM_glimmerT_56995-T1
Valid prediction for snap_scaffold_27-snap.773-T1
Valid prediction for GlimmerHMM_glimmerT_56996-T1
Valid prediction for GlimmerHMM_glimmerT_56998-T1
Valid prediction for snap_scaffold_27-snap.766-T1
Valid prediction for Augustus_model.g37768.t1
Valid prediction for Augustus_model.g37771.t1
Valid prediction for GlimmerHMM_glimmerT_56990-T1
Valid prediction for snap_scaffold_27-snap.771-T1
Valid prediction for snap_scaffold_27-snap.777-T1
Valid prediction for Augustus_model.g37773.t1
Valid prediction for GlimmerHMM_glimmerT_56986-T1
Valid prediction for snap_scaffold_27-snap.746-T1
Valid prediction for snap_scaffold_27-snap.763-T1
Couldn't classify 37798, 37921
Sorry, prediction pasa_asmbl_36904.p1 fails validation.
(ATG)	 CC	19122-19163	GT	AGG
(CAC)	 AG	21496-21573	GT	AGG
(GTC)	 AG	22157-22301	GT	TAG
(ACG)	 AG	22965-23088	GT	AGG
(GGT)	 AG	23231-23393	GT	AGG
(TCT)	 AG	24069-24155	GT	AGG
(GAG)	 AG	25532-25669	GT	AGG
(CAG)	 AG	26531-26607	GT	AGG
(GGA)	 AG	26915-26988	GT	AGG
(GAA)	 AG	28329-28483	GT	AGG
(CAC)	 AG	29594-29721	GT	AGG
(GTA)	 AG	29817-29912	GT	AGG
(GTA)	 AG	30207-30371	GT	AGG
(CAC)	 AG	30716-30942	GT	CGG
(ATC)	 AG	31176-31246	GT	AGG
(GTT)	 AG	31513-31741	GT	AGG
(AGG)	 AG	32161-32424	GT	AGG
(ACC)	 AG	32872-33014	GT	CAG
(GCT)	 AG	34015-34194	GT	AGG
(GCC)	 AG	36020-36198	GT	AGG
(GTG)	 AG	36987-37065	GT	AGG
(ATA)	 AG	37299-37378	GT	AGG
(TTA)	 AG	37798-37921	GT	TGG
-recovered pasa_asmbl_36904.p1, initial, 19122, 19163
-recovered pasa_asmbl_36904.p1, internal, 21496, 21573
-recovered pasa_asmbl_36904.p1, internal, 22157, 22301
-recovered pasa_asmbl_36904.p1, internal, 22965, 23088
-recovered pasa_asmbl_36904.p1, internal, 23231, 23393
-recovered pasa_asmbl_36904.p1, internal, 24069, 24155
-recovered pasa_asmbl_36904.p1, internal, 25532, 25669
-recovered pasa_asmbl_36904.p1, internal, 26531, 26607
-recovered pasa_asmbl_36904.p1, internal, 26915, 26988
-recovered pasa_asmbl_36904.p1, internal, 28329, 28483
-recovered pasa_asmbl_36904.p1, internal, 29594, 29721
-recovered pasa_asmbl_36904.p1, internal, 29817, 29912
-recovered pasa_asmbl_36904.p1, internal, 30207, 30371
-recovered pasa_asmbl_36904.p1, internal, 30716, 30942
-recovered pasa_asmbl_36904.p1, internal, 31176, 31246
-recovered pasa_asmbl_36904.p1, internal, 31513, 31741
-recovered pasa_asmbl_36904.p1, internal, 32161, 32424
-recovered pasa_asmbl_36904.p1, internal, 32872, 33014
-recovered pasa_asmbl_36904.p1, internal, 34015, 34194
-recovered pasa_asmbl_36904.p1, internal, 36020, 36198
-recovered pasa_asmbl_36904.p1, internal, 36987, 37065
-recovered pasa_asmbl_36904.p1, internal, 37299, 37378
-recovered pasa_asmbl_36904.p1, internal, 37798, 37921
Valid prediction for GlimmerHMM_glimmerT_56977-T1
Valid prediction for snap_scaffold_27-snap.754-T1
Valid prediction for GlimmerHMM_glimmerT_57001-T1
Valid prediction for GlimmerHMM_glimmerT_57002-T1
Valid prediction for CodingQuarry_transcript_41850-T1
Valid prediction for GlimmerHMM_glimmerT_56983-T1
Valid prediction for snap_scaffold_27-snap.753-T1
Valid prediction for GlimmerHMM_glimmerT_56993-T1
Valid prediction for Augustus_model.g37767.t1
Valid prediction for snap_scaffold_27-snap.765-T1
Valid prediction for GlimmerHMM_glimmerT_56999-T1
Valid prediction for snap_scaffold_27-snap.749-T1
Valid prediction for snap_scaffold_27-snap.748-T1
Valid prediction for Augustus_model.g37764.t1
Valid prediction for snap_scaffold_27-snap.758-T1
Valid prediction for snap_scaffold_27-snap.767-T1
Valid prediction for GlimmerHMM_glimmerT_56978-T1
Valid prediction for Augustus_model.g37762.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 51647, rend_intergenic: 46212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78036, rend_intergenic: 74276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85898, rend_intergenic: 83979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112609, rend_intergenic: 103326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 133469
-exon list size: 260


building trellis

0.4    
0.8    
1.1    
1.5    
1.9    
2.3    
2.7    
3.1    
3.4    
3.8    
4.2    
4.6    
5.0    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.6    
8.0    
8.4    
8.8    
9.2    
9.5    
9.9    
10.3    
10.7    
11.1    
11.5    
11.8    
12.2    
12.6    
13.0    
13.4    
13.7    
14.1    
14.5    
14.9    
15.3    
15.6    
16.0    
16.4    
16.8    
17.2    
17.6    
17.9    
18.3    
18.7    
19.1    
19.5    
19.8    
20.2    
20.6    
21.0    
21.4    
21.8    
22.1    
22.5    
22.9    
23.3    
23.7    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.3    
26.7    
27.1    
27.5    
27.9    
28.2    
28.6    
29.0    
29.4    
29.8    
30.2    
30.5    
30.9    
31.3    
31.7    
32.1    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.7    
35.1    
35.5    
35.9    
36.3    
36.6    
37.0    
37.4    
37.8    
38.2    
38.5    
38.9    
39.3    
39.7    
40.1    
40.5    
40.8    
41.2    
41.6    
42.0    
42.4    
42.7    
43.1    
43.5    
43.9    
44.3    
44.7    
45.0    
45.4    
45.8    
46.2    
46.6    
46.9    
47.3    
47.7    
48.1    
48.5    
48.9    
49.2    
49.6    
50.0    
50.4    
50.8    
51.1    
51.5    
51.9    
52.3    
52.7    
53.1    
53.4    
53.8    
54.2    
54.6    
55.0    
55.3    
55.7    
56.1    
56.5    
56.9    
57.3    
57.6    
58.0    
58.4    
58.8    
59.2    
59.5    
59.9    
60.3    
60.7    
61.1    
61.5    
61.8    
62.2    
62.6    
63.0    
63.4    
63.7    
64.1    
64.5    
64.9    
65.3    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
67.9    
68.3    
68.7    
69.1    
69.5    
69.8    
70.2    
70.6    
71.0    
71.4    
71.8    
72.1    
72.5    
72.9    
73.3    
73.7    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.3    
76.7    
77.1    
77.5    
77.9    
78.2    
78.6    
79.0    
79.4    
79.8    
80.2    
80.5    
80.9    
81.3    
81.7    
82.1    
82.4    
82.8    
83.2    
83.6    
84.0    
84.4    
84.7    
85.1    
85.5    
85.9    
86.3    
86.6    
87.0    
87.4    
87.8    
88.2    
88.5    
88.9    
89.3    
89.7    
90.1    
90.5    
90.8    
91.2    
91.6    
92.0    
92.4    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.0    
95.4    
95.8    
96.2    
96.6    
96.9    
97.3    
97.7    
98.1    
98.5    
98.9    
99.2    
99.6    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 51647, rend_intergenic: 46212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78036, rend_intergenic: 74276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85898, rend_intergenic: 83979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112609, rend_intergenic: 103326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support