-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_27/scaffold_27_2192888-2298739

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_27-snap.529-T1
Valid prediction for Augustus_model.g37629.t1
Valid prediction for GlimmerHMM_glimmerT_56804-T1
Valid prediction for snap_scaffold_27-snap.503-T1
Valid prediction for snap_scaffold_27-snap.512-T1
Valid prediction for snap_scaffold_27-snap.522-T1
Valid prediction for GlimmerHMM_glimmerT_56800-T1
Valid prediction for snap_scaffold_27-snap.523-T1
Valid prediction for snap_scaffold_27-snap.500-T1
Valid prediction for snap_scaffold_27-snap.516-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_27-snap.524-T1
Valid prediction for snap_scaffold_27-snap.507-T1
Valid prediction for GlimmerHMM_glimmerT_56802-T1
Valid prediction for GlimmerHMM_glimmerT_56797-T1
Valid prediction for snap_scaffold_27-snap.528-T1
Valid prediction for GlimmerHMM_glimmerT_56803-T1
Valid prediction for GlimmerHMM_glimmerT_56786-T1
Valid prediction for Augustus_model.g37638.t1
Valid prediction for snap_scaffold_27-snap.526-T1
Valid prediction for GlimmerHMM_glimmerT_56788-T1
Valid prediction for snap_scaffold_27-snap.519-T1
Valid prediction for Augustus_model.g37639.t1
Valid prediction for snap_scaffold_27-snap.521-T1
Valid prediction for snap_scaffold_27-snap.508-T1
Valid prediction for Augustus_model.g37632.t1
Valid prediction for GlimmerHMM_glimmerT_56793-T1
Valid prediction for GlimmerHMM_glimmerT_56787-T1
Valid prediction for GlimmerHMM_glimmerT_56799-T1
Valid prediction for GlimmerHMM_glimmerT_56791-T1
Valid prediction for GlimmerHMM_glimmerT_56792-T1
Valid prediction for snap_scaffold_27-snap.532-T1
Valid prediction for snap_scaffold_27-snap.515-T1
Valid prediction for GlimmerHMM_glimmerT_56795-T1
Valid prediction for snap_scaffold_27-snap.527-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g37635.t1
Valid prediction for Augustus_model.g37631.t1
Valid prediction for snap_scaffold_27-snap.509-T1
Valid prediction for snap_scaffold_27-snap.505-T1
Valid prediction for snap_scaffold_27-snap.525-T1
Valid prediction for Augustus_model.g37640.t1
Valid prediction for snap_scaffold_27-snap.504-T1
Valid prediction for snap_scaffold_27-snap.514-T1
Valid prediction for GlimmerHMM_glimmerT_56785-T1
Valid prediction for snap_scaffold_27-snap.501-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g37641.t1
Valid prediction for snap_scaffold_27-snap.520-T1
Valid prediction for GlimmerHMM_glimmerT_56798-T1
Valid prediction for snap_scaffold_27-snap.530-T1
Valid prediction for GlimmerHMM_glimmerT_56805-T1
Valid prediction for snap_scaffold_27-snap.502-T1
Valid prediction for snap_scaffold_27-snap.518-T1
Valid prediction for GlimmerHMM_glimmerT_56794-T1
Valid prediction for GlimmerHMM_glimmerT_56796-T1
Valid prediction for Augustus_model.g37636.t1
Valid prediction for Augustus_model.g37633.t1
Valid prediction for snap_scaffold_27-snap.513-T1
Valid prediction for GlimmerHMM_glimmerT_56784-T1
Valid prediction for Augustus_model.g37630.t1
Valid prediction for GlimmerHMM_glimmerT_56801-T1
Valid prediction for snap_scaffold_27-snap.517-T1
Valid prediction for Augustus_model.g37637.t1
Valid prediction for snap_scaffold_27-snap.510-T1
Valid prediction for GlimmerHMM_glimmerT_56790-T1
Valid prediction for snap_scaffold_27-snap.506-T1
Valid prediction for Augustus_model.g37634.t1
Valid prediction for snap_scaffold_27-snap.531-T1
Valid prediction for snap_scaffold_27-snap.511-T1
Valid prediction for GlimmerHMM_glimmerT_56789-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 45049, rend_intergenic: 43478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53765, rend_intergenic: 50768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62119, rend_intergenic: 60239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 105852
-exon list size: 198


building trellis

0.5    
1.0    
1.5    
2.0    
2.5    
3.0    
3.5    
4.0    
4.5    
5.0    
5.5    
6.0    
6.5    
7.0    
7.5    
8.0    
8.5    
9.0    
9.5    
10.0    
10.5    
11.0    
11.5    
12.0    
12.5    
13.0    
13.5    
14.0    
14.5    
15.0    
15.5    
16.0    
16.5    
17.0    
17.5    
18.0    
18.5    
19.0    
19.5    
20.0    
20.5    
21.0    
21.5    
22.0    
22.5    
23.0    
23.5    
24.0    
24.5    
25.0    
25.5    
26.0    
26.5    
27.0    
27.5    
28.0    
28.5    
29.0    
29.5    
30.0    
30.5    
31.0    
31.5    
32.0    
32.5    
33.0    
33.5    
34.0    
34.5    
35.0    
35.5    
36.0    
36.5    
37.0    
37.5    
38.0    
38.5    
39.0    
39.5    
40.0    
40.5    
41.0    
41.5    
42.0    
42.5    
43.0    
43.5    
44.0    
44.5    
45.0    
45.5    
46.0    
46.5    
47.0    
47.5    
48.0    
48.5    
49.0    
49.5    
50.0    
50.5    
51.0    
51.5    
52.0    
52.5    
53.0    
53.5    
54.0    
54.5    
55.0    
55.5    
56.0    
56.5    
57.0    
57.5    
58.0    
58.5    
59.0    
59.5    
60.0    
60.5    
61.0    
61.5    
62.0    
62.5    
63.0    
63.5    
64.0    
64.5    
65.0    
65.5    
66.0    
66.5    
67.0    
67.5    
68.0    
68.5    
69.0    
69.5    
70.0    
70.5    
71.0    
71.5    
72.0    
72.5    
73.0    
73.5    
74.0    
74.5    
75.0    
75.5    
76.0    
76.5    
77.0    
77.5    
78.0    
78.5    
79.0    
79.5    
80.0    
80.5    
81.0    
81.5    
82.0    
82.5    
83.0    
83.5    
84.0    
84.5    
85.0    
85.5    
86.0    
86.5    
87.0    
87.5    
88.0    
88.5    
89.0    
89.5    
90.0    
90.5    
91.0    
91.5    
92.0    
92.5    
93.0    
93.5    
94.0    
94.5    
95.0    
95.5    
96.0    
96.5    
97.0    
97.5    
98.0    
98.5    
99.0    
99.5    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 45049, rend_intergenic: 43478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53765, rend_intergenic: 50768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62119, rend_intergenic: 60239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support