-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2697

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 167, 317
Sorry, prediction GlimmerHMM_glimmerT_61674-T1 fails validation.
(CAG)	 AG	167-317	GT	CAG
(GGC)	 AG	987-1124	CT	AAC
-recovered GlimmerHMM_glimmerT_61674-T1, terminal, 987, 1124
-recovered GlimmerHMM_glimmerT_61674-T1, internal, 167, 317
Couldn't classify 167, 386
Couldn't classify 987, 1094
Sorry, prediction snap_scaffold_2697-snap.1-T1 fails validation.
(CAG)	 AG	167-386	GT	AGG
(GGC)	 AG	987-1094	GT	CAG
-recovered snap_scaffold_2697-snap.1-T1, internal, 167, 386
-recovered snap_scaffold_2697-snap.1-T1, internal, 987, 1094

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1145
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support