-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_268

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8531, 8651
Sorry, prediction snap_scaffold_268-snap.3-T1 fails validation.
(ATG)	 GG	7397-7629	GT	GGG
(CTT)	 AG	8531-8651	GT	CTG
-recovered snap_scaffold_268-snap.3-T1, initial, 7397, 7629
-recovered snap_scaffold_268-snap.3-T1, internal, 8531, 8651
Couldn't classify 63, 524
Sorry, prediction snap_scaffold_268-snap.2-T1 fails validation.
(GGT)	 AG	63-524	GT	CAG
(GCT)	 AG	1564-1907	GT	CGG
(GCC)	 AG	2549-2714	GT	TAG
(GCA)	 AG	5586-5678	GT	AGG
(GAG)	 AG	5848-5910	AG	AGA
-recovered snap_scaffold_268-snap.2-T1, terminal, 5848, 5910
-recovered snap_scaffold_268-snap.2-T1, internal, 63, 524
-recovered snap_scaffold_268-snap.2-T1, internal, 1564, 1907
-recovered snap_scaffold_268-snap.2-T1, internal, 2549, 2714
-recovered snap_scaffold_268-snap.2-T1, internal, 5586, 5678

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 100, 240
Couldn't classify 8688, 8755
Sorry, prediction Augustus_model.g39801.t1 fails validation.
(ATC)	 AG	100-240	GT	AGG
(GTG)	 AG	973-1252	GT	CGG
(AGG)	 AG	2918-3132	GT	AGG
(AGC)	 AG	5936-6062	GT	AGG
(GGT)	 AG	6143-6274	GT	AGG
(CTC)	 AG	6798-6940	GT	AGG
(GAC)	 AG	7067-7136	GT	CAG
(GCA)	 AG	7617-7739	GT	CGG
(AGG)	 AG	8117-8238	GT	TGG
(GCC)	 AG	8688-8755		GC
-recovered Augustus_model.g39801.t1, internal, 100, 240
-recovered Augustus_model.g39801.t1, internal, 973, 1252
-recovered Augustus_model.g39801.t1, internal, 2918, 3132
-recovered Augustus_model.g39801.t1, internal, 5936, 6062
-recovered Augustus_model.g39801.t1, internal, 6143, 6274
-recovered Augustus_model.g39801.t1, internal, 6798, 6940
-recovered Augustus_model.g39801.t1, internal, 7067, 7136
-recovered Augustus_model.g39801.t1, internal, 7617, 7739
-recovered Augustus_model.g39801.t1, internal, 8117, 8238
Couldn't classify 100, 240
Couldn't classify 8688, 8740
Sorry, prediction snap_scaffold_268-snap.1-T1 fails validation.
(ATC)	 AG	100-240	GT	AGG
(GTG)	 AG	973-1252	GT	CGG
(AGG)	 AG	2918-3132	GT	AGG
(AGC)	 AG	5936-6062	GT	AGG
(GGT)	 AG	6143-6274	GT	AGG
(CTC)	 AG	6844-6940	GT	AGG
(GAC)	 AG	7067-7136	GT	CAG
(GCC)	 AG	7154-7238	GT	GGG
(GCA)	 AG	7617-7739	GT	CGG
(AGG)	 AG	8117-8238	GT	TGG
(GCC)	 AG	8688-8740	GT	GAG
-recovered snap_scaffold_268-snap.1-T1, internal, 100, 240
-recovered snap_scaffold_268-snap.1-T1, internal, 973, 1252
-recovered snap_scaffold_268-snap.1-T1, internal, 2918, 3132
-recovered snap_scaffold_268-snap.1-T1, internal, 5936, 6062
-recovered snap_scaffold_268-snap.1-T1, internal, 6143, 6274
-recovered snap_scaffold_268-snap.1-T1, internal, 6844, 6940
-recovered snap_scaffold_268-snap.1-T1, internal, 7067, 7136
-recovered snap_scaffold_268-snap.1-T1, internal, 7154, 7238
-recovered snap_scaffold_268-snap.1-T1, internal, 7617, 7739
-recovered snap_scaffold_268-snap.1-T1, internal, 8117, 8238
-recovered snap_scaffold_268-snap.1-T1, internal, 8688, 8740
Valid prediction for GlimmerHMM_glimmerT_60107-T1
Couldn't classify 100, 240
Sorry, prediction GlimmerHMM_glimmerT_60108-T1 fails validation.
(ATC)	 AG	100-240	GT	AGG
(GTG)	 AG	973-1252	GT	CGG
(AGG)	 AG	2918-3132	GT	AGG
(GCC)	 AG	3329-3394	AC	AAA
-recovered GlimmerHMM_glimmerT_60108-T1, terminal, 3329, 3394
-recovered GlimmerHMM_glimmerT_60108-T1, internal, 100, 240
-recovered GlimmerHMM_glimmerT_60108-T1, internal, 973, 1252
-recovered GlimmerHMM_glimmerT_60108-T1, internal, 2918, 3132
Valid prediction for GlimmerHMM_glimmerT_60106-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8656, rend_intergenic: 63  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8755
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 8656, rend_intergenic: 63  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support