-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2677

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 723, 824
Sorry, prediction snap_scaffold_2677-snap.1-T1 fails validation.
(ATG)	 AG	322-445	GT	GGG
(GTG)	 AG	723-824	GT	AGG
add_exon() Sorry, snap_scaffold_2677-snap.1-T1 322-445-initial-1 is invalid.
-recovered snap_scaffold_2677-snap.1-T1, initial, 322, 445
-recovered snap_scaffold_2677-snap.1-T1, internal, 322, 445
-recovered snap_scaffold_2677-snap.1-T1, internal, 723, 824
Couldn't classify 341, 445
Sorry, prediction GlimmerHMM_glimmerT_61669-T1 fails validation.
(ATT)	 AG	341-445	GT	GGG
(GTG)	 AG	723-839	AC	GAA
-recovered GlimmerHMM_glimmerT_61669-T1, terminal, 723, 839
-recovered GlimmerHMM_glimmerT_61669-T1, internal, 341, 445
Valid prediction for CodingQuarry_transcript_40463-T1
Valid prediction for Augustus_model.g40962.t1
add_exon() Sorry, Augustus_model.g40962.t1 322-445-initial-1 is invalid.
add_exon() Sorry, Augustus_model.g40962.t1 723-839-terminal-2 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1154
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support