-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_266 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +) -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_266-snap.1-T1 Couldn't classify 1815, 1889 Sorry, prediction snap_scaffold_266-snap.3-T1 fails validation. (CCT) AG 1815-1889 GT AGG (AAA) AG 2048-2178 GT AGG (ACT) AG 2335-2362 CT GAC -recovered snap_scaffold_266-snap.3-T1, terminal, 2335, 2362 -recovered snap_scaffold_266-snap.3-T1, internal, 1815, 1889 -recovered snap_scaffold_266-snap.3-T1, internal, 2048, 2178 Valid prediction for GlimmerHMM_glimmerT_60102-T1 Valid prediction for Augustus_model.g39800.t1 Valid prediction for GlimmerHMM_glimmerT_60103-T1 Valid prediction for snap_scaffold_266-snap.2-T1 Couldn't classify 1815, 1889 Sorry, prediction GlimmerHMM_glimmerT_60104-T1 fails validation. (CCT) AG 1815-1889 GT AGG (AAA) AG 2048-2178 GT AGG (TAA) AG 3513-3613 GT CAG (AGT) AG 4698-4738 AG AGA -recovered GlimmerHMM_glimmerT_60104-T1, terminal, 4698, 4738 -recovered GlimmerHMM_glimmerT_60104-T1, internal, 1815, 1889 -recovered GlimmerHMM_glimmerT_60104-T1, internal, 2048, 2178 -recovered GlimmerHMM_glimmerT_60104-T1, internal, 3513, 3613 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 8791 -exon list size: 16 building trellis 5.6 11.1 16.7 22.2 27.8 33.3 38.9 44.4 50.0 55.6 61.1 66.7 72.2 77.8 83.3 88.9 94.4 -found 3 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 3 predictions persist after filtering for low support