-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_266

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_266-snap.1-T1
Couldn't classify 1815, 1889
Sorry, prediction snap_scaffold_266-snap.3-T1 fails validation.
(CCT)	 AG	1815-1889	GT	AGG
(AAA)	 AG	2048-2178	GT	AGG
(ACT)	 AG	2335-2362	CT	GAC
-recovered snap_scaffold_266-snap.3-T1, terminal, 2335, 2362
-recovered snap_scaffold_266-snap.3-T1, internal, 1815, 1889
-recovered snap_scaffold_266-snap.3-T1, internal, 2048, 2178
Valid prediction for GlimmerHMM_glimmerT_60102-T1
Valid prediction for Augustus_model.g39800.t1
Valid prediction for GlimmerHMM_glimmerT_60103-T1
Valid prediction for snap_scaffold_266-snap.2-T1
Couldn't classify 1815, 1889
Sorry, prediction GlimmerHMM_glimmerT_60104-T1 fails validation.
(CCT)	 AG	1815-1889	GT	AGG
(AAA)	 AG	2048-2178	GT	AGG
(TAA)	 AG	3513-3613	GT	CAG
(AGT)	 AG	4698-4738	AG	AGA
-recovered GlimmerHMM_glimmerT_60104-T1, terminal, 4698, 4738
-recovered GlimmerHMM_glimmerT_60104-T1, internal, 1815, 1889
-recovered GlimmerHMM_glimmerT_60104-T1, internal, 2048, 2178
-recovered GlimmerHMM_glimmerT_60104-T1, internal, 3513, 3613

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8791
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 3 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support