-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2648

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 68, 277
Couldn't classify 786, 887
Sorry, prediction snap_scaffold_2648-snap.1-T1 fails validation.
(GCT)	 AG	68-277	GT	ACG
(GCA)	 AG	786-887	GT	TGG
-recovered snap_scaffold_2648-snap.1-T1, internal, 68, 277
-recovered snap_scaffold_2648-snap.1-T1, internal, 786, 887
Couldn't classify 68, 277
Couldn't classify 786, 887
Sorry, prediction Augustus_model.g40952.t1 fails validation.
(GCT)	 AG	68-277	GT	ACG
(GCA)	 AG	786-887	GT	TGG
-recovered Augustus_model.g40952.t1, internal, 68, 277
-recovered Augustus_model.g40952.t1, internal, 786, 887
Couldn't classify 786, 887
Sorry, prediction GlimmerHMM_glimmerT_61661-T1 fails validation.
(ATG)	 AG	80-277	GT	ACG
(GCA)	 AG	786-887	GT	TGG
-recovered GlimmerHMM_glimmerT_61661-T1, initial, 80, 277
-recovered GlimmerHMM_glimmerT_61661-T1, internal, 80, 277
-recovered GlimmerHMM_glimmerT_61661-T1, internal, 786, 887

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1161
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support