-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_264

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2428, 2806
Couldn't classify 8309, 8510
Sorry, prediction snap_scaffold_264-snap.2-T1 fails validation.
(TGT)	 AG	2428-2806	GT	ATG
(CTG)	 AG	5916-6070	GT	AAG
(AGA)	 AG	6876-7149	GT	GGG
(AGG)	 AG	8138-8286	GT	TGG
(AGC)	 AG	8309-8510	GT	CGG
-recovered snap_scaffold_264-snap.2-T1, internal, 2428, 2806
-recovered snap_scaffold_264-snap.2-T1, internal, 5916, 6070
-recovered snap_scaffold_264-snap.2-T1, internal, 6876, 7149
-recovered snap_scaffold_264-snap.2-T1, internal, 8138, 8286
-recovered snap_scaffold_264-snap.2-T1, internal, 8309, 8510
Valid prediction for GlimmerHMM_glimmerT_60099-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 744, 824
Sorry, prediction GlimmerHMM_glimmerT_60100-T1 fails validation.
(GAG)	 AG	744-824	GT	AGG
(CCA)	 AG	2044-2064	GC	GAG
-recovered GlimmerHMM_glimmerT_60100-T1, terminal, 2044, 2064
-recovered GlimmerHMM_glimmerT_60100-T1, internal, 744, 824
-recovered GlimmerHMM_glimmerT_60100-T1, internal, 2044, 2064
Couldn't classify 744, 824
Couldn't classify 6764, 6880
Sorry, prediction snap_scaffold_264-snap.1-T1 fails validation.
(GAG)	 AG	744-824	GT	AGG
(AGG)	 AG	2127-2409	GT	ATG
(TGA)	 AG	4097-4386	GT	GTG
(ACA)	 AG	6764-6880	GT	GGG
-recovered snap_scaffold_264-snap.1-T1, internal, 744, 824
-recovered snap_scaffold_264-snap.1-T1, internal, 2127, 2409
-recovered snap_scaffold_264-snap.1-T1, internal, 4097, 4386
-recovered snap_scaffold_264-snap.1-T1, internal, 6764, 6880

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8087, rend_intergenic: 2428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8830
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 8087, rend_intergenic: 2428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support