-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2619

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 95, 305
Couldn't classify 792, 1025
Sorry, prediction Augustus_model.g40945.t1 fails validation.
(GTG)	 AG	95-305	GT	AGG
(GTG)	 AG	792-1025	GT	AGG
add_exon() Sorry, Augustus_model.g40945.t1 95-305-terminal-3 is invalid.
-recovered Augustus_model.g40945.t1, terminal, 95, 305
-recovered Augustus_model.g40945.t1, internal, 95, 305
-recovered Augustus_model.g40945.t1, internal, 792, 1025
Couldn't classify 95, 305
Sorry, prediction snap_scaffold_2619-snap.1-T1 fails validation.
(GTG)	 AG	95-305	GT	AGG
(GTG)	 AG	792-1057	AG	AAA
add_exon() Sorry, snap_scaffold_2619-snap.1-T1 95-305-terminal-3 is invalid.
-recovered snap_scaffold_2619-snap.1-T1, terminal, 95, 305
-recovered snap_scaffold_2619-snap.1-T1, terminal, 792, 1057
-recovered snap_scaffold_2619-snap.1-T1, internal, 95, 305
Valid prediction for GlimmerHMM_glimmerT_61649-T1
Valid prediction for GlimmerHMM_glimmerT_61648-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1172
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support