-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_260

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4756, 4824
Couldn't classify 6788, 7023
Sorry, prediction snap_scaffold_260-snap.1-T1 fails validation.
(GAA)	 AG	4756-4824	GT	CGG
(ACA)	 AG	5191-5529	GT	GGG
(GAG)	 AG	6015-6140	GT	GGG
(CCC)	 AG	6788-7023	GT	AGG
-recovered snap_scaffold_260-snap.1-T1, internal, 4756, 4824
-recovered snap_scaffold_260-snap.1-T1, internal, 5191, 5529
-recovered snap_scaffold_260-snap.1-T1, internal, 6015, 6140
-recovered snap_scaffold_260-snap.1-T1, internal, 6788, 7023
Valid prediction for Augustus_model.g39797.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1850, 2067
Sorry, prediction GlimmerHMM_glimmerT_60095-T1 fails validation.
(TCA)	 AG	1850-2067	GT	AGG
(AAG)	 AG	4476-4538	TC	GAT
-recovered GlimmerHMM_glimmerT_60095-T1, terminal, 4476, 4538
-recovered GlimmerHMM_glimmerT_60095-T1, internal, 1850, 2067
Couldn't classify 207, 318
Sorry, prediction snap_scaffold_260-snap.2-T1 fails validation.
(GAC)	 AG	207-318	GT	GAG
(AAA)	 AG	921-981	GT	AAG
(GGT)	 AG	1891-2058	GT	GGG
(AGT)	 AG	2904-3159	GT	TGG
(CTT)	 AG	3661-3836	AC	AGA
-recovered snap_scaffold_260-snap.2-T1, terminal, 3661, 3836
-recovered snap_scaffold_260-snap.2-T1, internal, 207, 318
-recovered snap_scaffold_260-snap.2-T1, internal, 921, 981
-recovered snap_scaffold_260-snap.2-T1, internal, 1891, 2058
-recovered snap_scaffold_260-snap.2-T1, internal, 2904, 3159

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7023, rend_intergenic: 5045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8880
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7023, rend_intergenic: 5045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support