-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_943954-1166590

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.242-T1
Valid prediction for snap_scaffold_26-snap.210-T1
Valid prediction for GlimmerHMM_glimmerT_55041-T1
Valid prediction for GlimmerHMM_glimmerT_55047-T1
Valid prediction for Augustus_model.g36498.t1
Valid prediction for snap_scaffold_26-snap.207-T1
Valid prediction for GlimmerHMM_glimmerT_55038-T1
Valid prediction for snap_scaffold_26-snap.221-T1
Valid prediction for snap_scaffold_26-snap.225-T1
Valid prediction for snap_scaffold_26-snap.234-T1
Valid prediction for Augustus_model.g36502.t1
Valid prediction for snap_scaffold_26-snap.216-T1
Valid prediction for snap_scaffold_26-snap.241-T1
Valid prediction for snap_scaffold_26-snap.232-T1
Valid prediction for snap_scaffold_26-snap.212-T1
Valid prediction for GlimmerHMM_glimmerT_55052-T1
Valid prediction for snap_scaffold_26-snap.203-T1
Valid prediction for GlimmerHMM_glimmerT_55053-T1
Valid prediction for snap_scaffold_26-snap.206-T1
Valid prediction for GlimmerHMM_glimmerT_55043-T1
Valid prediction for GlimmerHMM_glimmerT_55046-T1
Valid prediction for snap_scaffold_26-snap.236-T1
Valid prediction for snap_scaffold_26-snap.229-T1
Valid prediction for snap_scaffold_26-snap.200-T1
Valid prediction for GlimmerHMM_glimmerT_55036-T1
Valid prediction for snap_scaffold_26-snap.239-T1
Valid prediction for snap_scaffold_26-snap.214-T1
Valid prediction for snap_scaffold_26-snap.238-T1
Valid prediction for snap_scaffold_26-snap.220-T1
Valid prediction for snap_scaffold_26-snap.217-T1
Valid prediction for Augustus_model.g36501.t1
Valid prediction for GlimmerHMM_glimmerT_55050-T1
Valid prediction for snap_scaffold_26-snap.201-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_26-snap.231-T1
Valid prediction for GlimmerHMM_glimmerT_55051-T1
Valid prediction for GlimmerHMM_glimmerT_55039-T1
Valid prediction for GlimmerHMM_glimmerT_55048-T1
Valid prediction for GlimmerHMM_glimmerT_55042-T1
Valid prediction for snap_scaffold_26-snap.224-T1
Valid prediction for snap_scaffold_26-snap.209-T1
Valid prediction for snap_scaffold_26-snap.213-T1
Valid prediction for snap_scaffold_26-snap.230-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.208-T1
Valid prediction for snap_scaffold_26-snap.199-T1
Valid prediction for GlimmerHMM_glimmerT_55045-T1
Valid prediction for GlimmerHMM_glimmerT_55037-T1
Valid prediction for snap_scaffold_26-snap.204-T1
Valid prediction for snap_scaffold_26-snap.215-T1
Valid prediction for snap_scaffold_26-snap.223-T1
Valid prediction for snap_scaffold_26-snap.233-T1
Valid prediction for snap_scaffold_26-snap.211-T1
Valid prediction for snap_scaffold_26-snap.205-T1
Valid prediction for snap_scaffold_26-snap.219-T1
Valid prediction for snap_scaffold_26-snap.228-T1
Valid prediction for Augustus_model.g36497.t1
Valid prediction for snap_scaffold_26-snap.218-T1
Valid prediction for snap_scaffold_26-snap.226-T1
Valid prediction for snap_scaffold_26-snap.202-T1
Valid prediction for snap_scaffold_26-snap.237-T1
Valid prediction for snap_scaffold_26-snap.222-T1
Valid prediction for GlimmerHMM_glimmerT_55044-T1
Valid prediction for snap_scaffold_26-snap.227-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_55040-T1
Valid prediction for snap_scaffold_26-snap.235-T1
Valid prediction for Augustus_model.g36499.t1
Valid prediction for GlimmerHMM_glimmerT_55049-T1
Valid prediction for snap_scaffold_26-snap.240-T1
Valid prediction for Augustus_model.g36500.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 42433, rend_intergenic: 39832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51524, rend_intergenic: 42886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56619, rend_intergenic: 52417  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66965, rend_intergenic: 61481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78219, rend_intergenic: 72921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104007, rend_intergenic: 88255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111239, rend_intergenic: 106800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141318, rend_intergenic: 112440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161498, rend_intergenic: 151674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178379, rend_intergenic: 162675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181186, rend_intergenic: 178966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187476, rend_intergenic: 182772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193306, rend_intergenic: 191902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194653, rend_intergenic: 194158  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201049, rend_intergenic: 194658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202602, rend_intergenic: 201291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210536, rend_intergenic: 203676  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215712, rend_intergenic: 210647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220683, rend_intergenic: 216026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 222637
-exon list size: 244


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.3    
3.7    
4.1    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.8    
10.2    
10.6    
11.0    
11.4    
11.8    
12.2    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.9    
16.3    
16.7    
17.1    
17.5    
17.9    
18.3    
18.7    
19.1    
19.5    
19.9    
20.3    
20.7    
21.1    
21.5    
22.0    
22.4    
22.8    
23.2    
23.6    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.4    
26.8    
27.2    
27.6    
28.0    
28.5    
28.9    
29.3    
29.7    
30.1    
30.5    
30.9    
31.3    
31.7    
32.1    
32.5    
32.9    
33.3    
33.7    
34.1    
34.6    
35.0    
35.4    
35.8    
36.2    
36.6    
37.0    
37.4    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.7    
41.1    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
43.9    
44.3    
44.7    
45.1    
45.5    
45.9    
46.3    
46.7    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.3    
53.7    
54.1    
54.5    
54.9    
55.3    
55.7    
56.1    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.9    
59.3    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.6    
63.0    
63.4    
63.8    
64.2    
64.6    
65.0    
65.4    
65.9    
66.3    
66.7    
67.1    
67.5    
67.9    
68.3    
68.7    
69.1    
69.5    
69.9    
70.3    
70.7    
71.1    
71.5    
72.0    
72.4    
72.8    
73.2    
73.6    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.4    
76.8    
77.2    
77.6    
78.0    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.9    
81.3    
81.7    
82.1    
82.5    
82.9    
83.3    
83.7    
84.1    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.8    
88.2    
88.6    
89.0    
89.4    
89.8    
90.2    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
95.9    
96.3    
96.7    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 42433, rend_intergenic: 39832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51524, rend_intergenic: 42886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56619, rend_intergenic: 52417  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66965, rend_intergenic: 61481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78219, rend_intergenic: 72921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104007, rend_intergenic: 88255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111239, rend_intergenic: 106800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141318, rend_intergenic: 112440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161498, rend_intergenic: 151674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178379, rend_intergenic: 162675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181186, rend_intergenic: 178966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187476, rend_intergenic: 182772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193306, rend_intergenic: 191902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194653, rend_intergenic: 194158  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201049, rend_intergenic: 194658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202602, rend_intergenic: 201291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210536, rend_intergenic: 203676  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215712, rend_intergenic: 210647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220683, rend_intergenic: 216026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11427
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11099
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support