-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_8658784-8782817

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.1995-T1
Valid prediction for snap_scaffold_26-snap.2013-T1
Valid prediction for snap_scaffold_26-snap.2008-T1
Valid prediction for snap_scaffold_26-snap.2004-T1
Valid prediction for GlimmerHMM_glimmerT_56274-T1
Valid prediction for snap_scaffold_26-snap.1994-T1
Valid prediction for GlimmerHMM_glimmerT_56272-T1
Valid prediction for GlimmerHMM_glimmerT_56279-T1
Valid prediction for snap_scaffold_26-snap.1998-T1
Valid prediction for GlimmerHMM_glimmerT_56283-T1
Valid prediction for GlimmerHMM_glimmerT_56280-T1
Valid prediction for Augustus_model.g37289.t1
Valid prediction for GlimmerHMM_glimmerT_56278-T1
Valid prediction for snap_scaffold_26-snap.2007-T1
Valid prediction for snap_scaffold_26-snap.2011-T1
Valid prediction for snap_scaffold_26-snap.2005-T1
Valid prediction for snap_scaffold_26-snap.1992-T1
Valid prediction for GlimmerHMM_glimmerT_56281-T1
Valid prediction for snap_scaffold_26-snap.2001-T1
Valid prediction for snap_scaffold_26-snap.2009-T1
Valid prediction for Augustus_model.g37290.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_56286-T1
Valid prediction for snap_scaffold_26-snap.2006-T1
Valid prediction for GlimmerHMM_glimmerT_56277-T1
Valid prediction for GlimmerHMM_glimmerT_56275-T1
Valid prediction for Augustus_model.g37295.t1
Valid prediction for snap_scaffold_26-snap.2010-T1
Valid prediction for GlimmerHMM_glimmerT_56271-T1
Valid prediction for Augustus_model.g37287.t1
Valid prediction for snap_scaffold_26-snap.1999-T1
Valid prediction for snap_scaffold_26-snap.1996-T1
Valid prediction for GlimmerHMM_glimmerT_56282-T1
Valid prediction for snap_scaffold_26-snap.2000-T1
Valid prediction for GlimmerHMM_glimmerT_56289-T1
Valid prediction for Augustus_model.g37286.t1
Valid prediction for snap_scaffold_26-snap.2012-T1
Valid prediction for Augustus_model.g37285.t1
Valid prediction for GlimmerHMM_glimmerT_56285-T1
Valid prediction for GlimmerHMM_glimmerT_56288-T1
Valid prediction for GlimmerHMM_glimmerT_56284-T1
Valid prediction for snap_scaffold_26-snap.2002-T1
Valid prediction for Augustus_model.g37284.t1
Valid prediction for Augustus_model.g37288.t1
Valid prediction for Augustus_model.g37292.t1
Valid prediction for CodingQuarry_transcript_40418-T1
Valid prediction for pasa_asmbl_35748.p1
Valid prediction for snap_scaffold_26-snap.1997-T1
Valid prediction for GlimmerHMM_glimmerT_56276-T1
Valid prediction for snap_scaffold_26-snap.2003-T1
Valid prediction for snap_scaffold_26-snap.1993-T1
Valid prediction for snap_scaffold_26-snap.2014-T1
Valid prediction for GlimmerHMM_glimmerT_56273-T1
Valid prediction for Augustus_model.g37296.t1
Valid prediction for Augustus_model.g37294.t1
Valid prediction for HiQ_model.g37291.t1
Valid prediction for Augustus_model.g37293.t1
Valid prediction for snap_scaffold_26-snap.1991-T1
Valid prediction for GlimmerHMM_glimmerT_56287-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 61985, rend_intergenic: 57563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108200, rend_intergenic: 94603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114897, rend_intergenic: 110310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115130, rend_intergenic: 114960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119434, rend_intergenic: 115614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 124034
-exon list size: 205


building trellis

0.5    
1.0    
1.4    
1.9    
2.4    
2.9    
3.4    
3.9    
4.3    
4.8    
5.3    
5.8    
6.3    
6.8    
7.2    
7.7    
8.2    
8.7    
9.2    
9.7    
10.1    
10.6    
11.1    
11.6    
12.1    
12.6    
13.0    
13.5    
14.0    
14.5    
15.0    
15.5    
15.9    
16.4    
16.9    
17.4    
17.9    
18.4    
18.8    
19.3    
19.8    
20.3    
20.8    
21.3    
21.7    
22.2    
22.7    
23.2    
23.7    
24.2    
24.6    
25.1    
25.6    
26.1    
26.6    
27.1    
27.5    
28.0    
28.5    
29.0    
29.5    
30.0    
30.4    
30.9    
31.4    
31.9    
32.4    
32.9    
33.3    
33.8    
34.3    
34.8    
35.3    
35.7    
36.2    
36.7    
37.2    
37.7    
38.2    
38.6    
39.1    
39.6    
40.1    
40.6    
41.1    
41.5    
42.0    
42.5    
43.0    
43.5    
44.0    
44.4    
44.9    
45.4    
45.9    
46.4    
46.9    
47.3    
47.8    
48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.2    
52.7    
53.1    
53.6    
54.1    
54.6    
55.1    
55.6    
56.0    
56.5    
57.0    
57.5    
58.0    
58.5    
58.9    
59.4    
59.9    
60.4    
60.9    
61.4    
61.8    
62.3    
62.8    
63.3    
63.8    
64.3    
64.7    
65.2    
65.7    
66.2    
66.7    
67.1    
67.6    
68.1    
68.6    
69.1    
69.6    
70.0    
70.5    
71.0    
71.5    
72.0    
72.5    
72.9    
73.4    
73.9    
74.4    
74.9    
75.4    
75.8    
76.3    
76.8    
77.3    
77.8    
78.3    
78.7    
79.2    
79.7    
80.2    
80.7    
81.2    
81.6    
82.1    
82.6    
83.1    
83.6    
84.1    
84.5    
85.0    
85.5    
86.0    
86.5    
87.0    
87.4    
87.9    
88.4    
88.9    
89.4    
89.9    
90.3    
90.8    
91.3    
91.8    
92.3    
92.8    
93.2    
93.7    
94.2    
94.7    
95.2    
95.7    
96.1    
96.6    
97.1    
97.6    
98.1    
98.6    
99.0    
99.5    
-found 18 predictions from path traversal
Error with prediction: snap lend_intergenic: 61985, rend_intergenic: 57563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108200, rend_intergenic: 94603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114897, rend_intergenic: 110310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115130, rend_intergenic: 114960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119434, rend_intergenic: 115614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support