-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_8134601-8306248

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g37228.t1
Valid prediction for snap_scaffold_26-snap.1887-T1
Valid prediction for snap_scaffold_26-snap.1892-T1
Valid prediction for HiQ_model.g37237.t1
Valid prediction for snap_scaffold_26-snap.1880-T1
Valid prediction for Augustus_model.g37238.t1
Valid prediction for snap_scaffold_26-snap.1902-T1
Valid prediction for GlimmerHMM_glimmerT_56209-T1
Valid prediction for Augustus_model.g37243.t1
Valid prediction for Augustus_model.g37239.t1
Valid prediction for CodingQuarry_transcript_40408-T1
Valid prediction for GlimmerHMM_glimmerT_56197-T1
Valid prediction for snap_scaffold_26-snap.1881-T1
Valid prediction for GlimmerHMM_glimmerT_56199-T1
Valid prediction for snap_scaffold_26-snap.1897-T1
Valid prediction for snap_scaffold_26-snap.1899-T1
Valid prediction for GlimmerHMM_glimmerT_56210-T1
Valid prediction for snap_scaffold_26-snap.1901-T1
Couldn't classify 42489, 42861
Sorry, prediction pasa_asmbl_35161.p1 fails validation.
(CCC)	 CT	42489-42861	GT	TGG
(GTG)	 AG	44634-44936	GC	TGG
(GTC)	 AG	45252-45541	GG	GAG
-recovered pasa_asmbl_35161.p1, terminal, 45252, 45541
-recovered pasa_asmbl_35161.p1, internal, 44634, 44936
Valid prediction for snap_scaffold_26-snap.1903-T1
Valid prediction for GlimmerHMM_glimmerT_56213-T1
Valid prediction for snap_scaffold_26-snap.1888-T1
Valid prediction for GlimmerHMM_glimmerT_56201-T1
Valid prediction for snap_scaffold_26-snap.1883-T1
Valid prediction for snap_scaffold_26-snap.1886-T1
Valid prediction for snap_scaffold_26-snap.1878-T1
Valid prediction for GlimmerHMM_glimmerT_56202-T1
Valid prediction for snap_scaffold_26-snap.1910-T1
Valid prediction for GlimmerHMM_glimmerT_56195-T1
Valid prediction for GlimmerHMM_glimmerT_56193-T1
Valid prediction for snap_scaffold_26-snap.1879-T1
Valid prediction for HiQ_model.g37231.t1
Valid prediction for GlimmerHMM_glimmerT_56208-T1
Valid prediction for GlimmerHMM_glimmerT_56204-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_56191-T1
Valid prediction for snap_scaffold_26-snap.1890-T1
Valid prediction for snap_scaffold_26-snap.1877-T1
Valid prediction for GlimmerHMM_glimmerT_56196-T1
Valid prediction for GlimmerHMM_glimmerT_56211-T1
Valid prediction for GlimmerHMM_glimmerT_56194-T1
Valid prediction for GlimmerHMM_glimmerT_56203-T1
Valid prediction for snap_scaffold_26-snap.1909-T1
Valid prediction for GlimmerHMM_glimmerT_56200-T1
Valid prediction for snap_scaffold_26-snap.1907-T1
Valid prediction for snap_scaffold_26-snap.1911-T1
Valid prediction for GlimmerHMM_glimmerT_56206-T1
Valid prediction for Augustus_model.g37244.t1
Valid prediction for Augustus_model.g37232.t1
Valid prediction for snap_scaffold_26-snap.1908-T1
Valid prediction for GlimmerHMM_glimmerT_56205-T1
Valid prediction for Augustus_model.g37236.t1
Valid prediction for snap_scaffold_26-snap.1906-T1
Valid prediction for GlimmerHMM_glimmerT_56212-T1
Valid prediction for GlimmerHMM_glimmerT_56207-T1
Valid prediction for snap_scaffold_26-snap.1896-T1
Valid prediction for snap_scaffold_26-snap.1895-T1
Valid prediction for snap_scaffold_26-snap.1884-T1
Valid prediction for snap_scaffold_26-snap.1893-T1
Valid prediction for snap_scaffold_26-snap.1898-T1
Valid prediction for Augustus_model.g37241.t1
Valid prediction for Augustus_model.g37230.t1
Valid prediction for snap_scaffold_26-snap.1894-T1
Valid prediction for snap_scaffold_26-snap.1889-T1
Valid prediction for snap_scaffold_26-snap.1900-T1
Valid prediction for snap_scaffold_26-snap.1905-T1
Valid prediction for GlimmerHMM_glimmerT_56190-T1
Valid prediction for GlimmerHMM_glimmerT_56198-T1
Valid prediction for GlimmerHMM_glimmerT_56192-T1
Valid prediction for Augustus_model.g37233.t1
Valid prediction for Augustus_model.g37242.t1
Valid prediction for Augustus_model.g37234.t1
Valid prediction for snap_scaffold_26-snap.1882-T1
Valid prediction for snap_scaffold_26-snap.1885-T1
Valid prediction for snap_scaffold_26-snap.1904-T1
Valid prediction for Augustus_model.g37240.t1
Valid prediction for GlimmerHMM_glimmerT_56214-T1
Valid prediction for Augustus_model.g37235.t1
Valid prediction for Augustus_model.g37229.t1
Valid prediction for snap_scaffold_26-snap.1891-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 40375, rend_intergenic: 39862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42909, rend_intergenic: 41110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62154, rend_intergenic: 58274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77109, rend_intergenic: 66396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79332, rend_intergenic: 77892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80363, rend_intergenic: 79872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106530, rend_intergenic: 102185  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117408, rend_intergenic: 113671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 171648
-exon list size: 249


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
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3.2    
3.6    
4.0    
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4.8    
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5.6    
6.0    
6.4    
6.8    
7.2    
7.6    
8.0    
8.4    
8.8    
9.2    
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10.0    
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11.2    
11.6    
12.0    
12.4    
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13.5    
13.9    
14.3    
14.7    
15.1    
15.5    
15.9    
16.3    
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17.1    
17.5    
17.9    
18.3    
18.7    
19.1    
19.5    
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20.3    
20.7    
21.1    
21.5    
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22.3    
22.7    
23.1    
23.5    
23.9    
24.3    
24.7    
25.1    
25.5    
25.9    
26.3    
26.7    
27.1    
27.5    
27.9    
28.3    
28.7    
29.1    
29.5    
29.9    
30.3    
30.7    
31.1    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.5    
35.9    
36.3    
36.7    
37.1    
37.5    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.6    
41.0    
41.4    
41.8    
42.2    
42.6    
43.0    
43.4    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.6    
47.0    
47.4    
47.8    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.2    
52.6    
53.0    
53.4    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.6    
57.0    
57.4    
57.8    
58.2    
58.6    
59.0    
59.4    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.5    
62.9    
63.3    
63.7    
64.1    
64.5    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
68.9    
69.3    
69.7    
70.1    
70.5    
70.9    
71.3    
71.7    
72.1    
72.5    
72.9    
73.3    
73.7    
74.1    
74.5    
74.9    
75.3    
75.7    
76.1    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.9    
81.3    
81.7    
82.1    
82.5    
82.9    
83.3    
83.7    
84.1    
84.5    
84.9    
85.3    
85.7    
86.1    
86.5    
86.9    
87.3    
87.6    
88.0    
88.4    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.6    
92.0    
92.4    
92.8    
93.2    
93.6    
94.0    
94.4    
94.8    
95.2    
95.6    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 22 predictions from path traversal
Error with prediction: snap lend_intergenic: 40375, rend_intergenic: 39862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42909, rend_intergenic: 41110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62154, rend_intergenic: 58274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77109, rend_intergenic: 66396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79332, rend_intergenic: 77892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80363, rend_intergenic: 79872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106530, rend_intergenic: 102185  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117408, rend_intergenic: 113671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12758
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support