-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_7726722-7898135

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.1818-T1
Valid prediction for snap_scaffold_26-snap.1843-T1
Valid prediction for snap_scaffold_26-snap.1810-T1
Valid prediction for GlimmerHMM_glimmerT_56135-T1
Valid prediction for snap_scaffold_26-snap.1807-T1
Valid prediction for snap_scaffold_26-snap.1838-T1
Valid prediction for GlimmerHMM_glimmerT_56139-T1
Valid prediction for GlimmerHMM_glimmerT_56146-T1
Valid prediction for snap_scaffold_26-snap.1815-T1
Valid prediction for Augustus_model.g37214.t1
Valid prediction for snap_scaffold_26-snap.1806-T1
Valid prediction for snap_scaffold_26-snap.1829-T1
Valid prediction for GlimmerHMM_glimmerT_56151-T1
Valid prediction for GlimmerHMM_glimmerT_56156-T1
Valid prediction for snap_scaffold_26-snap.1839-T1
Valid prediction for snap_scaffold_26-snap.1840-T1
Valid prediction for Augustus_model.g37202.t1
Valid prediction for snap_scaffold_26-snap.1845-T1
Valid prediction for snap_scaffold_26-snap.1816-T1
Valid prediction for snap_scaffold_26-snap.1809-T1
Valid prediction for GlimmerHMM_glimmerT_56134-T1
Valid prediction for snap_scaffold_26-snap.1821-T1
Couldn't classify 132835, 132929
Couldn't classify 136730, 136825
Sorry, prediction pasa_asmbl_35151.p1 fails validation.
(TAC)	 TG	132835-132929	GT	ATG
(CAA)	 AG	134966-135117	GT	AGG
(GTT)	 AG	135227-135287	GT	CAG
(GGG)	 AG	135418-135558	GT	CAG
(GAC)	 AG	135971-136084	GT	CTG
(GAT)	 AG	136417-136591	GT	TGG
(GTG)	 AG	136730-136825	GG	TAG
-recovered pasa_asmbl_35151.p1, internal, 134966, 135117
-recovered pasa_asmbl_35151.p1, internal, 135227, 135287
-recovered pasa_asmbl_35151.p1, internal, 135418, 135558
-recovered pasa_asmbl_35151.p1, internal, 135971, 136084
-recovered pasa_asmbl_35151.p1, internal, 136417, 136591
Valid prediction for Augustus_model.g37205.t1
Valid prediction for Augustus_model.g37213.t1
Valid prediction for Augustus_model.g37208.t1
Valid prediction for snap_scaffold_26-snap.1836-T1
Valid prediction for Augustus_model.g37207.t1
Valid prediction for CodingQuarry_transcript_40405-T1
Valid prediction for GlimmerHMM_glimmerT_56161-T1
Valid prediction for GlimmerHMM_glimmerT_56141-T1
Couldn't classify 60497, 60626
Couldn't classify 61527, 61692
Sorry, prediction pasa_asmbl_35332.p1 fails validation.
(AAC)	 AG	60497-60626	GT	AGG
(AAT)	 AG	61136-61271	GT	GGG
(AAA)	 AG	61527-61692	TC	ACT
-recovered pasa_asmbl_35332.p1, internal, 60497, 60626
-recovered pasa_asmbl_35332.p1, internal, 61136, 61271
Valid prediction for snap_scaffold_26-snap.1820-T1
Valid prediction for GlimmerHMM_glimmerT_56158-T1
Valid prediction for GlimmerHMM_glimmerT_56155-T1
Valid prediction for GlimmerHMM_glimmerT_56159-T1
Valid prediction for Augustus_model.g37203.t1
Valid prediction for GlimmerHMM_glimmerT_56157-T1
Valid prediction for snap_scaffold_26-snap.1842-T1
Valid prediction for snap_scaffold_26-snap.1848-T1
Valid prediction for GlimmerHMM_glimmerT_56160-T1
Valid prediction for snap_scaffold_26-snap.1831-T1
Valid prediction for snap_scaffold_26-snap.1828-T1
Valid prediction for snap_scaffold_26-snap.1832-T1
Valid prediction for snap_scaffold_26-snap.1824-T1
Valid prediction for Augustus_model.g37200.t1
Valid prediction for snap_scaffold_26-snap.1817-T1
Valid prediction for snap_scaffold_26-snap.1833-T1
Valid prediction for snap_scaffold_26-snap.1825-T1
Valid prediction for snap_scaffold_26-snap.1823-T1
Couldn't classify 47764, 47970
Couldn't classify 51780, 51826
Sorry, prediction pasa_asmbl_35148.p1 fails validation.
(CCC)	 CC	47764-47970	GT	CAG
(CAG)	 AG	50858-51038	GT	AGG
(GTG)	 AG	51780-51826	GG	CTG
-recovered pasa_asmbl_35148.p1, internal, 50858, 51038
Valid prediction for Augustus_model.g37210.t1
Valid prediction for GlimmerHMM_glimmerT_56143-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_56142-T1
Valid prediction for GlimmerHMM_glimmerT_56152-T1
Valid prediction for snap_scaffold_26-snap.1826-T1
Valid prediction for Augustus_model.g37206.t1
Valid prediction for GlimmerHMM_glimmerT_56138-T1
Valid prediction for GlimmerHMM_glimmerT_56148-T1
Valid prediction for snap_scaffold_26-snap.1830-T1
Valid prediction for GlimmerHMM_glimmerT_56136-T1
Valid prediction for snap_scaffold_26-snap.1822-T1
Valid prediction for Augustus_model.g37211.t1
Valid prediction for snap_scaffold_26-snap.1814-T1
Valid prediction for Augustus_model.g37209.t1
Valid prediction for Augustus_model.g37204.t1
Valid prediction for snap_scaffold_26-snap.1841-T1
Valid prediction for GlimmerHMM_glimmerT_56147-T1
Valid prediction for snap_scaffold_26-snap.1844-T1
Valid prediction for GlimmerHMM_glimmerT_56163-T1
Valid prediction for snap_scaffold_26-snap.1835-T1
Valid prediction for GlimmerHMM_glimmerT_56162-T1
Valid prediction for snap_scaffold_26-snap.1812-T1
Valid prediction for GlimmerHMM_glimmerT_56140-T1
Valid prediction for snap_scaffold_26-snap.1846-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.1847-T1
Valid prediction for snap_scaffold_26-snap.1834-T1
Valid prediction for snap_scaffold_26-snap.1808-T1
Valid prediction for snap_scaffold_26-snap.1819-T1
Valid prediction for Augustus_model.g37212.t1
Valid prediction for GlimmerHMM_glimmerT_56137-T1
Valid prediction for GlimmerHMM_glimmerT_56154-T1
Valid prediction for GlimmerHMM_glimmerT_56153-T1
Valid prediction for GlimmerHMM_glimmerT_56149-T1
Valid prediction for snap_scaffold_26-snap.1811-T1
Valid prediction for GlimmerHMM_glimmerT_56150-T1
Valid prediction for GlimmerHMM_glimmerT_56145-T1
Valid prediction for GlimmerHMM_glimmerT_56144-T1
Valid prediction for snap_scaffold_26-snap.1827-T1
Valid prediction for snap_scaffold_26-snap.1805-T1
Valid prediction for snap_scaffold_26-snap.1837-T1
Valid prediction for snap_scaffold_26-snap.1813-T1
Valid prediction for Augustus_model.g37201.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6715, rend_intergenic: 3193  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13091, rend_intergenic: 8082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27740, rend_intergenic: 17306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43523, rend_intergenic: 30090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47006, rend_intergenic: 45353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57141, rend_intergenic: 50714  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90741, rend_intergenic: 88319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107160, rend_intergenic: 98217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114507, rend_intergenic: 108093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122316, rend_intergenic: 119278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133835, rend_intergenic: 130460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138484, rend_intergenic: 133890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153511, rend_intergenic: 144347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 171414
-exon list size: 360


building trellis

0.3    
0.6    
0.8    
1.1    
1.4    
1.7    
1.9    
2.2    
2.5    
2.8    
3.0    
3.3    
3.6    
3.9    
4.1    
4.4    
4.7    
5.0    
5.2    
5.5    
5.8    
6.1    
6.4    
6.6    
6.9    
7.2    
7.5    
7.7    
8.0    
8.3    
8.6    
8.8    
9.1    
9.4    
9.7    
9.9    
10.2    
10.5    
10.8    
11.0    
11.3    
11.6    
11.9    
12.2    
12.4    
12.7    
13.0    
13.3    
13.5    
13.8    
14.1    
14.4    
14.6    
14.9    
15.2    
15.5    
15.7    
16.0    
16.3    
16.6    
16.9    
17.1    
17.4    
17.7    
18.0    
18.2    
18.5    
18.8    
19.1    
19.3    
19.6    
19.9    
20.2    
20.4    
20.7    
21.0    
21.3    
21.5    
21.8    
22.1    
22.4    
22.7    
22.9    
23.2    
23.5    
23.8    
24.0    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
26.0    
26.2    
26.5    
26.8    
27.1    
27.3    
27.6    
27.9    
28.2    
28.5    
28.7    
29.0    
29.3    
29.6    
29.8    
30.1    
30.4    
30.7    
30.9    
31.2    
31.5    
31.8    
32.0    
32.3    
32.6    
32.9    
33.1    
33.4    
33.7    
34.0    
34.3    
34.5    
34.8    
35.1    
35.4    
35.6    
35.9    
36.2    
36.5    
36.7    
37.0    
37.3    
37.6    
37.8    
38.1    
38.4    
38.7    
39.0    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.2    
41.4    
41.7    
42.0    
42.3    
42.5    
42.8    
43.1    
43.4    
43.6    
43.9    
44.2    
44.5    
44.8    
45.0    
45.3    
45.6    
45.9    
46.1    
46.4    
46.7    
47.0    
47.2    
47.5    
47.8    
48.1    
48.3    
48.6    
48.9    
49.2    
49.4    
49.7    
50.0    
50.3    
50.6    
50.8    
51.1    
51.4    
51.7    
51.9    
52.2    
52.5    
52.8    
53.0    
53.3    
53.6    
53.9    
54.1    
54.4    
54.7    
55.0    
55.2    
55.5    
55.8    
56.1    
56.4    
56.6    
56.9    
57.2    
57.5    
57.7    
58.0    
58.3    
58.6    
58.8    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.0    
61.3    
61.6    
61.9    
62.2    
62.4    
62.7    
63.0    
63.3    
63.5    
63.8    
64.1    
64.4    
64.6    
64.9    
65.2    
65.5    
65.7    
66.0    
66.3    
66.6    
66.9    
67.1    
67.4    
67.7    
68.0    
68.2    
68.5    
68.8    
69.1    
69.3    
69.6    
69.9    
70.2    
70.4    
70.7    
71.0    
71.3    
71.5    
71.8    
72.1    
72.4    
72.7    
72.9    
73.2    
73.5    
73.8    
74.0    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
76.0    
76.2    
76.5    
76.8    
77.1    
77.3    
77.6    
77.9    
78.2    
78.5    
78.7    
79.0    
79.3    
79.6    
79.8    
80.1    
80.4    
80.7    
80.9    
81.2    
81.5    
81.8    
82.0    
82.3    
82.6    
82.9    
83.1    
83.4    
83.7    
84.0    
84.3    
84.5    
84.8    
85.1    
85.4    
85.6    
85.9    
86.2    
86.5    
86.7    
87.0    
87.3    
87.6    
87.8    
88.1    
88.4    
88.7    
89.0    
89.2    
89.5    
89.8    
90.1    
90.3    
90.6    
90.9    
91.2    
91.4    
91.7    
92.0    
92.3    
92.5    
92.8    
93.1    
93.4    
93.6    
93.9    
94.2    
94.5    
94.8    
95.0    
95.3    
95.6    
95.9    
96.1    
96.4    
96.7    
97.0    
97.2    
97.5    
97.8    
98.1    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 6715, rend_intergenic: 3193  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13091, rend_intergenic: 8082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27740, rend_intergenic: 17306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43523, rend_intergenic: 30090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47006, rend_intergenic: 45353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57141, rend_intergenic: 50714  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90741, rend_intergenic: 88319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107160, rend_intergenic: 98217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114507, rend_intergenic: 108093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122316, rend_intergenic: 119278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133835, rend_intergenic: 130460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138484, rend_intergenic: 133890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153511, rend_intergenic: 144347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support