-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_7613358-7728717

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.1792-T1
Valid prediction for snap_scaffold_26-snap.1797-T1
Valid prediction for snap_scaffold_26-snap.1799-T1
Valid prediction for GlimmerHMM_glimmerT_56131-T1
Valid prediction for GlimmerHMM_glimmerT_56119-T1
Valid prediction for GlimmerHMM_glimmerT_56125-T1
Valid prediction for snap_scaffold_26-snap.1801-T1
Valid prediction for snap_scaffold_26-snap.1800-T1
Valid prediction for snap_scaffold_26-snap.1778-T1
Valid prediction for Augustus_model.g37198.t1
Valid prediction for GlimmerHMM_glimmerT_56118-T1
Valid prediction for snap_scaffold_26-snap.1793-T1
Valid prediction for snap_scaffold_26-snap.1780-T1
Valid prediction for snap_scaffold_26-snap.1776-T1
Valid prediction for GlimmerHMM_glimmerT_56132-T1
Valid prediction for GlimmerHMM_glimmerT_56133-T1
Valid prediction for snap_scaffold_26-snap.1782-T1
Valid prediction for snap_scaffold_26-snap.1803-T1
Valid prediction for snap_scaffold_26-snap.1786-T1
Valid prediction for GlimmerHMM_glimmerT_56124-T1
Valid prediction for GlimmerHMM_glimmerT_56114-T1
Valid prediction for snap_scaffold_26-snap.1781-T1
Valid prediction for Augustus_model.g37197.t1
Valid prediction for Augustus_model.g37193.t1
Valid prediction for Augustus_model.g37195.t1
Valid prediction for GlimmerHMM_glimmerT_56126-T1
Valid prediction for snap_scaffold_26-snap.1804-T1
Valid prediction for GlimmerHMM_glimmerT_56120-T1
Valid prediction for snap_scaffold_26-snap.1788-T1
Valid prediction for snap_scaffold_26-snap.1775-T1
Valid prediction for snap_scaffold_26-snap.1784-T1
Valid prediction for Augustus_model.g37196.t1
Valid prediction for Augustus_model.g37194.t1
Valid prediction for snap_scaffold_26-snap.1787-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_56116-T1
Couldn't classify 1997, 2344
Sorry, prediction pasa_asmbl_35138.p1 fails validation.
(ACT)	 AA	1997-2344	TG	AGT
Valid prediction for GlimmerHMM_glimmerT_56123-T1
Valid prediction for GlimmerHMM_glimmerT_56128-T1
Valid prediction for snap_scaffold_26-snap.1777-T1
Valid prediction for GlimmerHMM_glimmerT_56130-T1
Valid prediction for GlimmerHMM_glimmerT_56129-T1
Valid prediction for snap_scaffold_26-snap.1789-T1
Valid prediction for snap_scaffold_26-snap.1783-T1
Valid prediction for snap_scaffold_26-snap.1790-T1
Valid prediction for snap_scaffold_26-snap.1794-T1
Valid prediction for Augustus_model.g37192.t1
Valid prediction for snap_scaffold_26-snap.1779-T1
Valid prediction for GlimmerHMM_glimmerT_56115-T1
Valid prediction for snap_scaffold_26-snap.1802-T1
Valid prediction for snap_scaffold_26-snap.1796-T1
Valid prediction for GlimmerHMM_glimmerT_56122-T1
Valid prediction for Augustus_model.g37199.t1
Valid prediction for GlimmerHMM_glimmerT_56112-T1
Valid prediction for GlimmerHMM_glimmerT_56121-T1
Valid prediction for GlimmerHMM_glimmerT_56127-T1
Valid prediction for snap_scaffold_26-snap.1785-T1
Valid prediction for snap_scaffold_26-snap.1791-T1
Valid prediction for Augustus_model.g37191.t1
Valid prediction for snap_scaffold_26-snap.1798-T1
Valid prediction for GlimmerHMM_glimmerT_56113-T1
Valid prediction for Augustus_model.g37190.t1
Valid prediction for GlimmerHMM_glimmerT_56117-T1
Valid prediction for snap_scaffold_26-snap.1795-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16519, rend_intergenic: 13766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35345, rend_intergenic: 28604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52401, rend_intergenic: 51024  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66187, rend_intergenic: 64843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79150, rend_intergenic: 75002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 66190, rend_intergenic: 66187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 115360
-exon list size: 205


building trellis

0.5    
1.0    
1.4    
1.9    
2.4    
2.9    
3.4    
3.9    
4.3    
4.8    
5.3    
5.8    
6.3    
6.8    
7.2    
7.7    
8.2    
8.7    
9.2    
9.7    
10.1    
10.6    
11.1    
11.6    
12.1    
12.6    
13.0    
13.5    
14.0    
14.5    
15.0    
15.5    
15.9    
16.4    
16.9    
17.4    
17.9    
18.4    
18.8    
19.3    
19.8    
20.3    
20.8    
21.3    
21.7    
22.2    
22.7    
23.2    
23.7    
24.2    
24.6    
25.1    
25.6    
26.1    
26.6    
27.1    
27.5    
28.0    
28.5    
29.0    
29.5    
30.0    
30.4    
30.9    
31.4    
31.9    
32.4    
32.9    
33.3    
33.8    
34.3    
34.8    
35.3    
35.7    
36.2    
36.7    
37.2    
37.7    
38.2    
38.6    
39.1    
39.6    
40.1    
40.6    
41.1    
41.5    
42.0    
42.5    
43.0    
43.5    
44.0    
44.4    
44.9    
45.4    
45.9    
46.4    
46.9    
47.3    
47.8    
48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.2    
52.7    
53.1    
53.6    
54.1    
54.6    
55.1    
55.6    
56.0    
56.5    
57.0    
57.5    
58.0    
58.5    
58.9    
59.4    
59.9    
60.4    
60.9    
61.4    
61.8    
62.3    
62.8    
63.3    
63.8    
64.3    
64.7    
65.2    
65.7    
66.2    
66.7    
67.1    
67.6    
68.1    
68.6    
69.1    
69.6    
70.0    
70.5    
71.0    
71.5    
72.0    
72.5    
72.9    
73.4    
73.9    
74.4    
74.9    
75.4    
75.8    
76.3    
76.8    
77.3    
77.8    
78.3    
78.7    
79.2    
79.7    
80.2    
80.7    
81.2    
81.6    
82.1    
82.6    
83.1    
83.6    
84.1    
84.5    
85.0    
85.5    
86.0    
86.5    
87.0    
87.4    
87.9    
88.4    
88.9    
89.4    
89.9    
90.3    
90.8    
91.3    
91.8    
92.3    
92.8    
93.2    
93.7    
94.2    
94.7    
95.2    
95.7    
96.1    
96.6    
97.1    
97.6    
98.1    
98.6    
99.0    
99.5    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 16519, rend_intergenic: 13766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35345, rend_intergenic: 28604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52401, rend_intergenic: 51024  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66187, rend_intergenic: 64843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79150, rend_intergenic: 75002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 66190, rend_intergenic: 66187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 100961 - 115360
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 100961 - 112669
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 100961 - 112442
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support