-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_26/scaffold_26_7342799-7490606

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.1702-T1
Valid prediction for Augustus_model.g37173.t1
Valid prediction for Augustus_model.g37170.t1
Couldn't classify 104518, 104541
Couldn't classify 105193, 105315
Sorry, prediction pasa_asmbl_35113.p1 fails validation.
(AAG)	 TC	104518-104541	GT	AGG
(ATC)	 AG	104666-104771	GT	TGG
(TGT)	 AG	104952-105067	GT	CCG
(CTG)	 AG	105193-105315	AG	GCA
-recovered pasa_asmbl_35113.p1, internal, 104666, 104771
-recovered pasa_asmbl_35113.p1, internal, 104952, 105067
Valid prediction for snap_scaffold_26-snap.1710-T1
Valid prediction for snap_scaffold_26-snap.1738-T1
Valid prediction for snap_scaffold_26-snap.1724-T1
Valid prediction for CodingQuarry_transcript_40401-T1
Valid prediction for GlimmerHMM_glimmerT_56073-T1
Valid prediction for snap_scaffold_26-snap.1718-T1
Valid prediction for Augustus_model.g37156.t1
Valid prediction for snap_scaffold_26-snap.1708-T1
Valid prediction for GlimmerHMM_glimmerT_56087-T1
Valid prediction for Augustus_model.g37166.t1
Valid prediction for snap_scaffold_26-snap.1722-T1
Valid prediction for snap_scaffold_26-snap.1714-T1
Valid prediction for snap_scaffold_26-snap.1715-T1
Valid prediction for Augustus_model.g37158.t1
Valid prediction for GlimmerHMM_glimmerT_56069-T1
Valid prediction for snap_scaffold_26-snap.1704-T1
Valid prediction for GlimmerHMM_glimmerT_56088-T1
Valid prediction for GlimmerHMM_glimmerT_56066-T1
Valid prediction for pasa_asmbl_35118.p1
Valid prediction for Augustus_model.g37162.t1
Valid prediction for snap_scaffold_26-snap.1727-T1
Valid prediction for snap_scaffold_26-snap.1743-T1
Valid prediction for snap_scaffold_26-snap.1717-T1
Valid prediction for Augustus_model.g37169.t1
Valid prediction for snap_scaffold_26-snap.1735-T1
Valid prediction for Augustus_model.g37161.t1
Valid prediction for snap_scaffold_26-snap.1731-T1
Valid prediction for snap_scaffold_26-snap.1744-T1
Valid prediction for GlimmerHMM_glimmerT_56077-T1
Valid prediction for Augustus_model.g37155.t1
Valid prediction for Augustus_model.g37168.t1
Valid prediction for GlimmerHMM_glimmerT_56083-T1
Valid prediction for snap_scaffold_26-snap.1725-T1
Valid prediction for snap_scaffold_26-snap.1740-T1
Valid prediction for snap_scaffold_26-snap.1733-T1
Valid prediction for snap_scaffold_26-snap.1746-T1
Valid prediction for snap_scaffold_26-snap.1730-T1
Valid prediction for Augustus_model.g37172.t1
Valid prediction for snap_scaffold_26-snap.1720-T1
Valid prediction for GlimmerHMM_glimmerT_56084-T1
Valid prediction for snap_scaffold_26-snap.1707-T1
Valid prediction for snap_scaffold_26-snap.1739-T1
Valid prediction for GlimmerHMM_glimmerT_56081-T1
Valid prediction for GlimmerHMM_glimmerT_56067-T1
Valid prediction for snap_scaffold_26-snap.1723-T1
Valid prediction for GlimmerHMM_glimmerT_56075-T1
Couldn't classify 105484, 105686
Sorry, prediction pasa_asmbl_35114.p1 fails validation.
(TCG)	 CG	105484-105686	GT	CGG
(ACA)	 AG	105821-105974	CC	AAC
-recovered pasa_asmbl_35114.p1, terminal, 105821, 105974
Valid prediction for snap_scaffold_26-snap.1737-T1
Valid prediction for snap_scaffold_26-snap.1719-T1
Valid prediction for snap_scaffold_26-snap.1712-T1
Valid prediction for GlimmerHMM_glimmerT_56078-T1
Valid prediction for Augustus_model.g37157.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g37171.t1
Valid prediction for GlimmerHMM_glimmerT_56082-T1
Valid prediction for Augustus_model.g37165.t1
Valid prediction for Augustus_model.g37159.t1
Valid prediction for snap_scaffold_26-snap.1709-T1
Couldn't classify 109921, 110015
Couldn't classify 110698, 110798
Sorry, prediction pasa_asmbl_35825.p1 fails validation.
(GGC)	 AG	109921-110015	GT	AAG
(CAC)	 AG	110447-110556	GT	GGG
(GGG)	 AG	110698-110798	GG	TGG
-recovered pasa_asmbl_35825.p1, internal, 109921, 110015
-recovered pasa_asmbl_35825.p1, internal, 110447, 110556
Valid prediction for snap_scaffold_26-snap.1713-T1
Valid prediction for snap_scaffold_26-snap.1716-T1
Valid prediction for snap_scaffold_26-snap.1726-T1
Valid prediction for GlimmerHMM_glimmerT_56080-T1
Valid prediction for snap_scaffold_26-snap.1728-T1
Valid prediction for snap_scaffold_26-snap.1734-T1
Valid prediction for GlimmerHMM_glimmerT_56074-T1
Valid prediction for GlimmerHMM_glimmerT_56085-T1
Valid prediction for GlimmerHMM_glimmerT_56079-T1
Valid prediction for snap_scaffold_26-snap.1711-T1
Valid prediction for Augustus_model.g37163.t1
Valid prediction for GlimmerHMM_glimmerT_56068-T1
Valid prediction for GlimmerHMM_glimmerT_56076-T1
Valid prediction for Augustus_model.g37160.t1
Valid prediction for GlimmerHMM_glimmerT_56071-T1
Valid prediction for Augustus_model.g37167.t1
Valid prediction for snap_scaffold_26-snap.1721-T1
Valid prediction for GlimmerHMM_glimmerT_56086-T1
Valid prediction for snap_scaffold_26-snap.1741-T1
Valid prediction for snap_scaffold_26-snap.1736-T1
Valid prediction for GlimmerHMM_glimmerT_56070-T1
Valid prediction for snap_scaffold_26-snap.1729-T1
Valid prediction for snap_scaffold_26-snap.1732-T1
Valid prediction for snap_scaffold_26-snap.1705-T1
Valid prediction for snap_scaffold_26-snap.1703-T1
Valid prediction for snap_scaffold_26-snap.1745-T1
Valid prediction for snap_scaffold_26-snap.1742-T1
Valid prediction for Augustus_model.g37164.t1
Valid prediction for snap_scaffold_26-snap.1706-T1
Valid prediction for GlimmerHMM_glimmerT_56072-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10903, rend_intergenic: 3304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17574, rend_intergenic: 12492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19357, rend_intergenic: 18418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22781, rend_intergenic: 20363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36197, rend_intergenic: 27689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43509, rend_intergenic: 37267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46729, rend_intergenic: 45379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62170, rend_intergenic: 46901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66295, rend_intergenic: 65623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77333, rend_intergenic: 67439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80354, rend_intergenic: 79044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87094, rend_intergenic: 84291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130206, rend_intergenic: 115115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145108, rend_intergenic: 139622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 147808
-exon list size: 346


building trellis

0.3    
0.6    
0.9    
1.1    
1.4    
1.7    
2.0    
2.3    
2.6    
2.9    
3.2    
3.4    
3.7    
4.0    
4.3    
4.6    
4.9    
5.2    
5.5    
5.7    
6.0    
6.3    
6.6    
6.9    
7.2    
7.5    
7.8    
8.0    
8.3    
8.6    
8.9    
9.2    
9.5    
9.8    
10.1    
10.3    
10.6    
10.9    
11.2    
11.5    
11.8    
12.1    
12.4    
12.6    
12.9    
13.2    
13.5    
13.8    
14.1    
14.4    
14.7    
14.9    
15.2    
15.5    
15.8    
16.1    
16.4    
16.7    
17.0    
17.2    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.3    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
21.8    
22.1    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.1    
26.4    
26.7    
27.0    
27.3    
27.6    
27.9    
28.2    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.2    
30.5    
30.7    
31.0    
31.3    
31.6    
31.9    
32.2    
32.5    
32.8    
33.0    
33.3    
33.6    
33.9    
34.2    
34.5    
34.8    
35.1    
35.3    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.6    
37.9    
38.2    
38.5    
38.8    
39.1    
39.4    
39.7    
39.9    
40.2    
40.5    
40.8    
41.1    
41.4    
41.7    
42.0    
42.2    
42.5    
42.8    
43.1    
43.4    
43.7    
44.0    
44.3    
44.5    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.6    
46.8    
47.1    
47.4    
47.7    
48.0    
48.3    
48.6    
48.9    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.1    
51.4    
51.7    
52.0    
52.3    
52.6    
52.9    
53.2    
53.4    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.5    
55.7    
56.0    
56.3    
56.6    
56.9    
57.2    
57.5    
57.8    
58.0    
58.3    
58.6    
58.9    
59.2    
59.5    
59.8    
60.1    
60.3    
60.6    
60.9    
61.2    
61.5    
61.8    
62.1    
62.4    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.7    
64.9    
65.2    
65.5    
65.8    
66.1    
66.4    
66.7    
67.0    
67.2    
67.5    
67.8    
68.1    
68.4    
68.7    
69.0    
69.3    
69.5    
69.8    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
71.8    
72.1    
72.4    
72.7    
73.0    
73.3    
73.6    
73.9    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.9    
78.2    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.7    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.8    
83.0    
83.3    
83.6    
83.9    
84.2    
84.5    
84.8    
85.1    
85.3    
85.6    
85.9    
86.2    
86.5    
86.8    
87.1    
87.4    
87.6    
87.9    
88.2    
88.5    
88.8    
89.1    
89.4    
89.7    
89.9    
90.2    
90.5    
90.8    
91.1    
91.4    
91.7    
92.0    
92.2    
92.5    
92.8    
93.1    
93.4    
93.7    
94.0    
94.3    
94.5    
94.8    
95.1    
95.4    
95.7    
96.0    
96.3    
96.6    
96.8    
97.1    
97.4    
97.7    
98.0    
98.3    
98.6    
98.9    
99.1    
99.4    
99.7    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 10903, rend_intergenic: 3304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17574, rend_intergenic: 12492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19357, rend_intergenic: 18418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22781, rend_intergenic: 20363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36197, rend_intergenic: 27689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43509, rend_intergenic: 37267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46729, rend_intergenic: 45379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62170, rend_intergenic: 46901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66295, rend_intergenic: 65623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77333, rend_intergenic: 67439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80354, rend_intergenic: 79044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87094, rend_intergenic: 84291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130206, rend_intergenic: 115115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145108, rend_intergenic: 139622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support